Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g01437 ATGGAGATGGACCCTGACGTTGTTGAAATTCTTCCCCCAATTCACCGAACTTCCAGATTGGTTAAGCAAAATCAGGCCATTCCACAGGATGTGATTGAAATTGACAACGACGATGATTGCGAGGATTTAATGATAATTGGTGAAAAAGTTGGTAAAAGTAACAAGGGGAAGACAATTGAATCTATTCACAATGGCTATGGCAATCAAGTTGTGGAAAGTGGGTTTGAGACTTCTACTGGTCATTCTTCGGTACCACATAACCTAACTAGTGTTGATGCTCATGTTGCGGATCTATCATATGATGATGATGAGGATGCTGATGATGACTACATTGATTTTATTTCTGAAGAGTATGCACAAGTCGATGAGTATGCTTTATTACAGGCACACTTTGATAATGTGGATATACCTCCCGGAATTGAGGCACCGTTTACTTGGTTGCCAGAATATGAACAAGGTTTGAAGCAAACTGGGAATAGTTCTTTGCATCCTTGGTATCCTACACAATCAGATGCTGAAATTCCTCAGGTGATAGAGTCAGCTAAATCTAAAATCATAGGATCTTCAACAGGTGCTTCTAATTTTCAAATGAACATGGGTGATGTTGATCACTCCTCTGGAATAAATTTGGCTTCTCAATCTGCTCATAGTAAGAAGAAAGTAGCTAATTCACAACGCAGGGTTCGTGGTTCGCACACATTATCAGGACCCCACTCATCTAAGTCTCAATGGTTTTCAGGACCTTTCCATGTTAAAAAGACACCTGCTATTGGTTTCGTCGGCAATTCAGAGGCTGTGAAACCACCACCGGCAGGTGCACCACCATTTTGGAGGAAATTTAAAACTGCTAAGAAGCTAGGTGGCAGTAGCAGTTTGTACCATCCAAGTTTCATTGGACAGAATGGATCATTTCATCCACCAGGAATGGAATCAAAAGGCCCATGGTCAACAAATTTTCAGAATTTTATGCCAACTTTTTCTGATTACAATGCTAATTCAACTAGCTATGGTCCACTTGATTTTCTTCATCCTCCTCCTGGGCATATGCAGTTTAACACATCGGTTCACAATTCTGCCGGAGAAGGAAATAGTGGAGATAGCCCAGTTGTGGCCATCTCTGATGAAGATCGGGATGAAATCATGATGAAATTTCGAAGTTTTAAACAATTTGACACTGTTGAAGATCCATCAGATCATCGCTTTGTTGGCTATAACTCTTCCTTGAAGCAGCATCCAAAGAATTGGGCTAAAAAAATCCAGGATGAGTGGAAGATTTTGGAGAAGGATTTGCCAGATACAATATTTGTCCGAGTTTATGAATCAAGGATGGATCTTTTGAGGGCCGTTATTATCGGAGCAGTGGGGACTCCTTATCATGATGGTCTTTTCTTCTTTGATGTTTTCTTCCCCAGTGGCTATCCCAATGTACCGCCGCAAGTTTACTACCACTCTGGAGGTCTTCGACTCAACCCGAACTTGTATAATTGTGGCAAAGTATGCCTTAGCCTGCTTAATACCTGGTCTGGCAACAAGAACGAGAAGTGGCTTCCAGGTGTTTCAACAATTCTGCAGGTTCTGGTCTCTATACAAGGTCTAATTCTCAATACGAAGCCTTACTTTAACGAACCTGGATATGCACACATGAGTGGTTCCGCAAATGGTGAAACAAAGTCCCTGCAGTATAATGAGGACACATTCATCCTTTCATTAAGAACAATGATGTATATGATGAAAAGGCCCCCCAAGCATTTTGAGAACTTTGTTACGGGGCATTTCTATAGCCGAGCTCATGATATTCTAGTGGCATGCAAAGCGTACATGGAGGGTGCGCAAGTTGGATGTTTGGTCAAGGGTGGGGTTCAGGATGTCGACGAAGGCGACAAAAGCTGCTCGAAGCAGTTCAAGGAATCTCTAACTGGATATGTGAGTATGATTGTCAAAGAGTTTGCAAAAATTGGAGTTAAGGACTGTGAGAAGTTCCTCTCCACCAAAAAAATAGTGAACAAGCCTTTGTCTTTGCCTGCAGCCTGA 2031 0.4185 MEMDPDVVEILPPIHRTSRLVKQNQAIPQDVIEIDNDDDCEDLMIIGEKVGKSNKGKTIESIHNGYGNQVVESGFETSTGHSSVPHNLTSVDAHVADLSYDDDEDADDDYIDFISEEYAQVDEYALLQAHFDNVDIPPGIEAPFTWLPEYEQGLKQTGNSSLHPWYPTQSDAEIPQVIESAKSKIIGSSTGASNFQMNMGDVDHSSGINLASQSAHSKKKVANSQRRVRGSHTLSGPHSSKSQWFSGPFHVKKTPAIGFVGNSEAVKPPPAGAPPFWRKFKTAKKLGGSSSLYHPSFIGQNGSFHPPGMESKGPWSTNFQNFMPTFSDYNANSTSYGPLDFLHPPPGHMQFNTSVHNSAGEGNSGDSPVVAISDEDRDEIMMKFRSFKQFDTVEDPSDHRFVGYNSSLKQHPKNWAKKIQDEWKILEKDLPDTIFVRVYESRMDLLRAVIIGAVGTPYHDGLFFFDVFFPSGYPNVPPQVYYHSGGLRLNPNLYNCGKVCLSLLNTWSGNKNEKWLPGVSTILQVLVSIQGLILNTKPYFNEPGYAHMSGSANGETKSLQYNEDTFILSLRTMMYMMKRPPKHFENFVTGHFYSRAHDILVACKAYMEGAQVGCLVKGGVQDVDEGDKSCSKQFKESLTGYVSMIVKEFAKIGVKDCEKFLSTKKIVNKPLSLPAA 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g01437 676 Pfam Ubiquitin-conjugating enzyme 419 543 IPR000608 -
Aip08g01437 676 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 414 574 IPR000608 -
Aip08g01437 676 SMART ubc_7 417 574 - -
Aip08g01437 676 SUPERFAMILY UBC-like 402 583 IPR016135 -
Aip08g01437 676 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 39-RELATED 18 665 - -
Aip08g01437 676 CDD UBCc 417 543 IPR000608 -
Aip08g01437 676 PANTHER (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME 18 665 - -
Aip08g01437 676 MobiDBLite consensus disorder prediction 227 247 - -
Aip08g01437 676 Gene3D Ubiquitin Conjugating Enzyme 373 655 IPR016135 -
Aip08g01437 676 MobiDBLite consensus disorder prediction 211 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g01437 Aip-Chr8 23432785 23437160 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g01437 387 657 Miscellaneous Gene Families AT2G33770 52.747 1.16e-86 289
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g01437 K10581 - gmx:100809853 810.061
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g01437 08 23432785 23437160 Aip08g01437 08 23432785 23437160 ECH