Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g01406 ATGGATCGGGTTCTGAGGGCGGCGCGTGCCTCCGGTTCCCTCAACCTCTCAAATCGCAACCTCCGACACGTTCCCGATGAGGCTGTGGAGCTTCAGAAGCTGATTTTGGCTCACAATAGCATTGAGTCTTTGAAGGATGATATTCGCAACTTGCCTTGCCTTGCTGTCTTGAATCTTAGCCACAACAGGCTTTCTGAGCTCCCGGCTGCTATCGGAGAGCTGCCTCAGTTGAAGTTGTTGGATGTTTCATTCAATTTGATATCTAAAATACCAGAGGAAATTGGCTCAGCAACATCACTTGTTAAGCTTGATTGTTCAAACAATCAGCTCAAGGAACTTCCAAGCTCACTTGGCAGATGCTTAGAATTGTCCGACCTAAAGGGATCAAACAATCTTATTGCAAGCTTGCCAGAAGATTTAGCAAATTGTTCCAAATTGTCCAAGCTAGATATGGAGGGAAACAAGTTAACAGAGATATCTGAAAATCTCTTTTCATCATGGACCATGCTTACTGAATTCAATGCATCAAAAAACTTGTTGAATGGCATACCAGACAGCATTGGAGGCCTTTCACGTCTAATTCGTCTTGATCTCCACCAGAACAGAATCTCATCAATCCCTTCATCAATCATGGGTTGTCATTCACTTGCCGAGATTTATTTGGGGAATAACAACCTTTCTACAGTACCTATGGAGATTGGAGCACTTTCTCATCTAGGGACTTTAGATCTTCACTCTAATCAGCTGAAGGAGTATCCAGTAGAGGCATGCAAATTGAATCTTCTTGTGTTAAATCTTTCAAACAATTCACTGAGTGGGTTACCCGCTGAAATTGGTAAGATGACCACCTTGAGGAAACTTTTGCTTACTGGAAATCCTTTGCGGACTCTCCGAAGCTCATTAGTCAATGGACCTACACAAGCATTACTCAAATATCTCCGAAGTAGACTTTCTGAAGCTGAAGATTCTGGAGCAGTAATCACAGAAAAAGATGAAGTAATTGCAATGGCTACCCGGCTGTCTGTCACTTCAAAGGAATTTTCAATGGAAGGACTGGGGTTGAATTCAGTTCCACCAGAAGTATGGGAATCAGGGGAAGTCATGAAACTTGACCTTTCCAAAAACTCCATCCAGGAGTTGCCTGTTGAGCTTTCTTCTTGTGTATCCCTCCAGACATTGATTTTATCTAAGAATCAAATTAAAGACTGGCCAGGTTCAATTCTTAAGTCACTTTCTAGTTTGTCATGTCTGAAGCTGGACAACAATCCTCTGAGGCAGATACCATCAGATGGTTTTGAAGCGGTGCCTATGCTTCAGATCCTGGATCTCAGTGGTAATGCAGCTTCATTAGTTGATGGACCTTCATTTTCTTGTTTGACACACCTTAAAGAGCTTTACATGAGGAGAATGCAGCTCGGTGAGTTCCCATCAGATATACTGAAGTTGCATCAACTACAGATCCTTGATTTGAAACAGAATTCCCTTCAGTCAATTCCTGTGGGGATAAAAGATCTCACTTCTCTCAAGGAGCTTGATTTATCTGATAACAACATCTCAGCCCTTCCACCTGAGTTGGGTTTGCTGGAGCCAAGCCTTCAAGCATTGAGACTTGATGGGAATCCACTCAGAAGCATTCGGAGGACTGTCTTGGATAAAGGAACTAAAGCTGTTCTGAATTATTTGAAGGACAAACTACCGGAGCAATAA 1707 0.4265 MDRVLRAARASGSLNLSNRNLRHVPDEAVELQKLILAHNSIESLKDDIRNLPCLAVLNLSHNRLSELPAAIGELPQLKLLDVSFNLISKIPEEIGSATSLVKLDCSNNQLKELPSSLGRCLELSDLKGSNNLIASLPEDLANCSKLSKLDMEGNKLTEISENLFSSWTMLTEFNASKNLLNGIPDSIGGLSRLIRLDLHQNRISSIPSSIMGCHSLAEIYLGNNNLSTVPMEIGALSHLGTLDLHSNQLKEYPVEACKLNLLVLNLSNNSLSGLPAEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTQALLKYLRSRLSEAEDSGAVITEKDEVIAMATRLSVTSKEFSMEGLGLNSVPPEVWESGEVMKLDLSKNSIQELPVELSSCVSLQTLILSKNQIKDWPGSILKSLSSLSCLKLDNNPLRQIPSDGFEAVPMLQILDLSGNAASLVDGPSFSCLTHLKELYMRRMQLGEFPSDILKLHQLQILDLKQNSLQSIPVGIKDLTSLKELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSIRRTVLDKGTKAVLNYLKDKLPEQ 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g01406 568 ProSiteProfiles Leucine-rich repeat profile. 76 97 IPR001611 GO:0005515
Aip08g01406 568 PANTHER LEUCINE RICH REPEAT CONTAINING PROTEIN 120 210 - -
Aip08g01406 568 ProSiteProfiles Leucine-rich repeat profile. 30 52 IPR001611 GO:0005515
Aip08g01406 568 ProSiteProfiles Leucine-rich repeat profile. 192 213 IPR001611 GO:0005515
Aip08g01406 568 SUPERFAMILY L domain-like 13 305 - -
Aip08g01406 568 PRINTS Leucine-rich repeat signature 505 518 - -
Aip08g01406 568 PRINTS Leucine-rich repeat signature 261 274 - -
Aip08g01406 568 ProSiteProfiles Leucine-rich repeat profile. 260 281 IPR001611 GO:0005515
Aip08g01406 568 SMART LRR_typ_2 190 213 IPR003591 -
Aip08g01406 568 SMART LRR_typ_2 482 504 IPR003591 -
Aip08g01406 568 SMART LRR_typ_2 260 280 IPR003591 -
Aip08g01406 568 SMART LRR_typ_2 411 434 IPR003591 -
Aip08g01406 568 SMART LRR_typ_2 51 72 IPR003591 -
Aip08g01406 568 SMART LRR_typ_2 29 50 IPR003591 -
Aip08g01406 568 SMART LRR_typ_2 505 528 IPR003591 -
Aip08g01406 568 SMART LRR_typ_2 74 97 IPR003591 -
Aip08g01406 568 SMART LRR_typ_2 98 120 IPR003591 -
Aip08g01406 568 SMART LRR_typ_2 530 552 IPR003591 -
Aip08g01406 568 SMART LRR_typ_2 143 166 IPR003591 -
Aip08g01406 568 SMART LRR_typ_2 281 304 IPR003591 -
Aip08g01406 568 SMART LRR_typ_2 365 387 IPR003591 -
Aip08g01406 568 SMART LRR_typ_2 388 410 IPR003591 -
Aip08g01406 568 SMART LRR_typ_2 236 259 IPR003591 -
Aip08g01406 568 PANTHER LRR RECEPTOR-LIKE KINASE 196 568 - -
Aip08g01406 568 PANTHER LRR RECEPTOR-LIKE KINASE 14 115 - -
Aip08g01406 568 PANTHER LRR RECEPTOR-LIKE KINASE 120 210 - -
Aip08g01406 568 Gene3D Ribonuclease Inhibitor 72 156 IPR032675 -
Aip08g01406 568 Gene3D Ribonuclease Inhibitor 157 256 IPR032675 -
Aip08g01406 568 Gene3D Ribonuclease Inhibitor 451 564 IPR032675 -
Aip08g01406 568 PANTHER LEUCINE RICH REPEAT CONTAINING PROTEIN 14 115 - -
Aip08g01406 568 PANTHER LEUCINE RICH REPEAT CONTAINING PROTEIN 196 568 - -
Aip08g01406 568 Pfam Leucine rich repeat 484 542 IPR001611 GO:0005515
Aip08g01406 568 Pfam Leucine rich repeat 413 469 IPR001611 GO:0005515
Aip08g01406 568 Pfam Leucine rich repeat 238 294 IPR001611 GO:0005515
Aip08g01406 568 Pfam Leucine rich repeat 30 87 IPR001611 GO:0005515
Aip08g01406 568 Pfam Leucine rich repeat 174 226 IPR001611 GO:0005515
Aip08g01406 568 ProSiteProfiles Leucine-rich repeat profile. 389 410 IPR001611 GO:0005515
Aip08g01406 568 SUPERFAMILY L domain-like 346 545 - -
Aip08g01406 568 SMART LRR_bac_2 190 209 - -
Aip08g01406 568 SMART LRR_bac_2 97 116 - -
Aip08g01406 568 SMART LRR_bac_2 482 501 - -
Aip08g01406 568 SMART LRR_bac_2 258 277 - -
Aip08g01406 568 SMART LRR_bac_2 74 93 - -
Aip08g01406 568 SMART LRR_bac_2 143 162 - -
Aip08g01406 568 SMART LRR_bac_2 213 232 - -
Aip08g01406 568 SMART LRR_bac_2 505 525 - -
Aip08g01406 568 SMART LRR_bac_2 51 70 - -
Aip08g01406 568 Gene3D Ribonuclease Inhibitor 5 71 IPR032675 -
Aip08g01406 568 ProSiteProfiles Leucine-rich repeat profile. 53 74 IPR001611 GO:0005515
Aip08g01406 568 ProSiteProfiles Leucine-rich repeat profile. 507 528 IPR001611 GO:0005515
Aip08g01406 568 Gene3D Ribonuclease Inhibitor 257 323 IPR032675 -
Aip08g01406 568 Gene3D Ribonuclease Inhibitor 327 450 IPR032675 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g01406 78 524 Receptor kinase-like Gene Family AT1G08590 28.070 4.24e-16 80.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g01406 - - gmx:100781571 898.656
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g01406 08 22825381 22832093 Aip08g01406 08 22825381 22832093 ECH