Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g01401 ATGGTGGATCGCTTTAGGCCTGTTTCCATTGAAGAGTTACCTTCACACTTGATCTTAGAGATTCTGTGCTCGGGAAGGTTAAGTGCAATAGACCTTGCTTGCTTGGAGCTTACTTCAAAAACTTTTGGTGGTAGCCATGGATTGTATCCATTCAAGTTTAGTTCATTGGTGGACTTTGCTGCATTTCAGTTGTGTGCCTCCCATATTATCTACTCTAAGACGAGTTTAAATTCTCAGAAGGAGTTGTATGATCGATGCGGCGCAAATTGGAAGCGGGTCTTGAGGTTCTTACAGTCTGTTGAACAATCCTCTGAGATGGTGGAGACATCAGCAGGCAATATGCAAATTACAACTGGAAAGTATCACACCCTGTTGATCAGCAATTCCTCTGTCTACTCTTGTGGTTCTGGATTATCTGGTGTACTTGGTCAAGGGCCTGAAACACAATGCGTAGCATTTACCCGGATAAGTTTCCCACCTTTGGCACGTGTAGTTCATGTATCAGCCTCCTTTAATCATGCAGCTTTTGTTATGCAATCTGGAGAGGTATTCACATGTGGAGATAATTCATCTTCTTGCTGTGGCCATAGCGATACAAGCCGACCGATTTCCAGGCCACGTCTTGTTGAATCCCTGAAGGGAGTCCCTTGCAAGCAGGTTGCAGCAGGGCTTAACTTCACAGTCTTCCTCACTAGACAAGGTCATGTTTATACATGTGGAACCAATTCGCATGGCCAACTTGGCCATGGTGACTCTCAGGACAGACCAACTCCAAAAATGATTGAAGTCCTTGGTAATGCAGATCCTGTTGTTCAGATTGCTGCTGGACCAAGCTATATCTTAGCTGTAACAGCGAACGGAGCTGTATACTCCTTTGGGTCGGGGGCTAACTTCTGCCTTGGTCATGGGGAGCAACATAATGAGTTTCTGCCACGTGCTATACAGAAGTTTAGAAGAAAAGGTATTCATGTTGTCCGTGTATCTGCCGGGGATGAGCATGCAGTGGCACTTGATTCAAATGGATTCGTATATACGTGGGGCAAGGGATACTGTGGTGCTCTTGGCCTTGGGGACGAGATTGAGAAAACTACCCCCGAGATTGTGACCGGTCTTAAGAATCACTTGGCTGTTCAGGTCTGTGCAAGAAAGAGGAAAACTTTTGTGCTAATTGATTCTGGTTCAGTCTATGGCTTTGGTTCGATGGGATTCGGCAGCCTGGGATTTCTCGACAGAGGGGTATATGATAAAATCTTGAAGCCAAGAATCTTGGATACCTTAAAAACTCACCGTGTTTCACAAATTAGCACTGGATTGTATCATACAGTGGCAATCACAAGCAGTGGAAGGATATTTGGATTTGGAGACAATGAAAGAGCACAACTTGGTCATGACACATTAAGAGGGTGCCTTGAACCAACTGAGATTTTCGTCAAAGAAGATTCTTCACAAGAAAATATAGATCCCGACATTTGA 1473 0.4453 MVDRFRPVSIEELPSHLILEILCSGRLSAIDLACLELTSKTFGGSHGLYPFKFSSLVDFAAFQLCASHIIYSKTSLNSQKELYDRCGANWKRVLRFLQSVEQSSEMVETSAGNMQITTGKYHTLLISNSSVYSCGSGLSGVLGQGPETQCVAFTRISFPPLARVVHVSASFNHAAFVMQSGEVFTCGDNSSSCCGHSDTSRPISRPRLVESLKGVPCKQVAAGLNFTVFLTRQGHVYTCGTNSHGQLGHGDSQDRPTPKMIEVLGNADPVVQIAAGPSYILAVTANGAVYSFGSGANFCLGHGEQHNEFLPRAIQKFRRKGIHVVRVSAGDEHAVALDSNGFVYTWGKGYCGALGLGDEIEKTTPEIVTGLKNHLAVQVCARKRKTFVLIDSGSVYGFGSMGFGSLGFLDRGVYDKILKPRILDTLKTHRVSQISTGLYHTVAITSSGRIFGFGDNERAQLGHDTLRGCLEPTEIFVKEDSSQENIDPDI 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g01401 490 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 393 447 IPR000408 -
Aip08g01401 490 Pfam Regulator of chromosome condensation (RCC1) repeat 234 282 IPR000408 -
Aip08g01401 490 Pfam Regulator of chromosome condensation (RCC1) repeat 340 381 IPR000408 -
Aip08g01401 490 Pfam Regulator of chromosome condensation (RCC1) repeat 180 230 IPR000408 -
Aip08g01401 490 Pfam Regulator of chromosome condensation (RCC1) repeat 286 337 IPR000408 -
Aip08g01401 490 SUPERFAMILY RCC1/BLIP-II 111 409 IPR009091 -
Aip08g01401 490 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 234 286 IPR000408 -
Aip08g01401 490 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 341 392 IPR000408 -
Aip08g01401 490 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 327 337 IPR000408 -
Aip08g01401 490 Gene3D - 267 487 IPR009091 -
Aip08g01401 490 Gene3D - 86 266 IPR009091 -
Aip08g01401 490 SUPERFAMILY RCC1/BLIP-II 377 476 IPR009091 -
Aip08g01401 490 Pfam Regulator of chromosome condensation (RCC1) repeat 431 459 - -
Aip08g01401 490 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 9 482 - -
Aip08g01401 490 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 287 340 IPR000408 -
Aip08g01401 490 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 181 233 IPR000408 -
Aip08g01401 490 Coils Coil 490 490 - -
Aip08g01401 490 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 434 444 IPR000408 -
Aip08g01401 490 PANTHER BNAA01G28890D PROTEIN 9 482 - -
Aip08g01401 490 PRINTS Chromosome condensation regulator RCC1 signature 130 146 IPR000408 -
Aip08g01401 490 PRINTS Chromosome condensation regulator RCC1 signature 183 199 IPR000408 -
Aip08g01401 490 PRINTS Chromosome condensation regulator RCC1 signature 273 289 IPR000408 -
Aip08g01401 490 PRINTS Chromosome condensation regulator RCC1 signature 289 303 IPR000408 -
Aip08g01401 490 PRINTS Chromosome condensation regulator RCC1 signature 382 400 IPR000408 -
Aip08g01401 490 PRINTS Chromosome condensation regulator RCC1 signature 443 464 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g01401 Aip-Chr8 22672913 22677354 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g01401 - - lang:109357264 862.448
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g01401 08 22672913 22677354 Aip08g01401 08 22672913 22677354 ECH