Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g01387 ATGACCTACGCCGCCGGCCACCACCAAAACGACACCGCCGACCTCTTCTACGAGTCCCTTGACAGGCTACTATCCTCCTCCGAATGCTCTACCTCCACCACCTCCGACACCGAACAAGAACCGCCGCAACACCACCACCACAAGCCCGACGACGGAATTTACAATTATGCCCTCGCACTCAACAACAACTACGACCTCTGGATCTCTCATCCTTCCTCCGTCTCCGAGCGCCGTTCCTCCCTCCTCCGCCACCTCGGTCTCGCCGCTCCCTCGCCCCCGCGCGATAATGGGGACTCTTCCCGCTCCCCGTCGTCGGATCAGTTGACTGGACTGCGTCAGGGCTCCGCCGGAGGGATGCCCCGATCGAGCTCTGACGGTGCCGCGGATCCTCAGAATTCCGTTGGTGATGGTGTTGATGATGATGATGAAAAGCCTTGTGAAGATGGCATGTGGAACAAGTTCAGGGAGGTCGGCACTGGCCGGCAACTGACAATGGAGGAGTTTGAAATGACGGTCGGTCACTCGCCGATTGTCCAAGAGCTCATGAGGAGGCAGAATGTGGAGGAAAGCCATGGAAAGGACAATGTGGATTCAATTGGCAATGAAGGTGGCAAGGGAAACAATGGTTCCAAGTTGAAGAAGAGAGGGAACTGGTTGAGGGCCTTAAAATCCGCGATGGGGACACATAAGGAGCGGCGAAGCAGCGACGAGAGGGACACCTCTTCGGAGAAGGGGGGGAGGAGGTCAAGCTCCGCCACGGATGACAGCCAGGATAATGCCTCATTCCATGGACCTGAGAGAGTTAAGGTTAGGCAGTATGGGAAGCCATGTAAGGAGGTCACAGCTCTTTACAAGAGCCAGGAGATTCAGGCTCATAATGGATCTATATGGAGTATTAAGTTTAGCTTAGATGGGAAGTATTTAGCAAGTGCCGGCGAGGATTGTGTGATCCATGTGTGGCAGGTTGTGGAGTCTGAGAGGAAGGGGGAGCTGCTGATGGAAAAACATGAGGATGGGAATATGAACATGTTGTTTGTTGTCAATGGATCTTCGCTGGAGCCGAATCTGCTGTCCCCTCTCATGGACAAGTCACCTCTCTTGGACAATCATCATCCAGAGAGGAAGAGGAAGGGGAGGACATCCATTACCCGGAAATCGTTGAGCTTGGATCAATTAGTTATCCCGGATACCGTGTTTGCGCTCACCGAGAAACCCATTTGCTCCTTTCAGGGACATCTTCATGATGTGCTTGACCTCTCTTGGTCCAAATCTCAGCACTTGCTCTCATCTTCAATGGACAAAACGGTGCGGTTGTGGCATTTGTCTAGCAACTCTTGTTTGAAAGTTTTTTCACACAGTGACTTTGTAACTTGCATCCAGTTTAATCCTGTTGATGATAATTACTTCATTAGCGGATCCTTGGATGCTAAGGTTCGCATATGGAGCATTCCTGATAGGCAGGTTGTTGATTGGACTGATATGCATGAGATGGTTACTGCTGCTTGTTATACACCCGATGGTCAGAGTGCACTGGTTGGTTCTTACAAGGGCAGTTGCCACTTATATAACACATCAGAAAATAAGTTGCAACAAAAAAGTCAGATCAATCTGCAGAACAAGAAGAAGAAATCACATCTAAAAAAAATTACAGGTTTCCAGTTTGCCCCAGGAAGTTCATCAGAGGTACTTATCACATCTGCTGATTCACGAATTCGGGTTGTTGATGGTGTTGACCTGGTTCACAAGTTTAAAGGGTTCCGTAATTCGTCAAGCCAAATTTCAGCCTCTCTGACAGCCAACGGTAAATATATTGTCTCCGCGAGTGAGGATTCCCACGTGTACATATGGAAAAATGAAGCGGATTGTAGGCCTAACAGAAGCAAAGGTGTAACTATCACAGGTGCATACGAACATTTCCACTGTAAAGATGTTTCAGTGGCCATTCCATGGCCAGGTATGGGCGATGCCTGGGACATGCACGATACACTTTCTGGAGAGCAAACTGAGATTGATAACAATGTGGATGAGGCCTTGTCCGCCAATCATCCTCCAACCCCCGTTGAGGAAAACTTTGGCTCCGAGGGTTCACGATCCACATCGGTTTACAGCAATAGTCCGCGCCAGGCAACCATTGCAGGTGCCACAAACAGCTACTTTTTCGATAGAATTTCTGCAACATGGCCGGAGGAAAAACTTGTCGTGGCAGCTACAAAGAATCGAAGCCCTCGTATCAGTGGGGATTACTCAAACACAGGAAGTCAAAACATGTCAGCCTGGGGTATGGTGATTGTAACTGCTGGCCTTCGAGGTGAAATTAGAACTTTCCAAAATTTTGGATTGCCACTTCGGATATAA 2355 0.4934 MTYAAGHHQNDTADLFYESLDRLLSSSECSTSTTSDTEQEPPQHHHHKPDDGIYNYALALNNNYDLWISHPSSVSERRSSLLRHLGLAAPSPPRDNGDSSRSPSSDQLTGLRQGSAGGMPRSSSDGAADPQNSVGDGVDDDDEKPCEDGMWNKFREVGTGRQLTMEEFEMTVGHSPIVQELMRRQNVEESHGKDNVDSIGNEGGKGNNGSKLKKRGNWLRALKSAMGTHKERRSSDERDTSSEKGGRRSSSATDDSQDNASFHGPERVKVRQYGKPCKEVTALYKSQEIQAHNGSIWSIKFSLDGKYLASAGEDCVIHVWQVVESERKGELLMEKHEDGNMNMLFVVNGSSLEPNLLSPLMDKSPLLDNHHPERKRKGRTSITRKSLSLDQLVIPDTVFALTEKPICSFQGHLHDVLDLSWSKSQHLLSSSMDKTVRLWHLSSNSCLKVFSHSDFVTCIQFNPVDDNYFISGSLDAKVRIWSIPDRQVVDWTDMHEMVTAACYTPDGQSALVGSYKGSCHLYNTSENKLQQKSQINLQNKKKKSHLKKITGFQFAPGSSSEVLITSADSRIRVVDGVDLVHKFKGFRNSSSQISASLTANGKYIVSASEDSHVYIWKNEADCRPNRSKGVTITGAYEHFHCKDVSVAIPWPGMGDAWDMHDTLSGEQTEIDNNVDEALSANHPPTPVEENFGSEGSRSTSVYSNSPRQATIAGATNSYFFDRISATWPEEKLVVAATKNRSPRISGDYSNTGSQNMSAWGMVIVTAGLRGEIRTFQNFGLPLRI 784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g01387 784 MobiDBLite consensus disorder prediction 95 130 - -
Aip08g01387 784 MobiDBLite consensus disorder prediction 225 251 - -
Aip08g01387 784 MobiDBLite consensus disorder prediction 27 50 - -
Aip08g01387 784 ProSiteProfiles Trp-Asp (WD) repeats profile. 289 330 IPR001680 GO:0005515
Aip08g01387 784 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 449 483 - -
Aip08g01387 784 PRINTS G protein beta WD-40 repeat signature 308 322 IPR020472 -
Aip08g01387 784 PRINTS G protein beta WD-40 repeat signature 469 483 IPR020472 -
Aip08g01387 784 PRINTS G protein beta WD-40 repeat signature 427 441 IPR020472 -
Aip08g01387 784 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN-RELATED 8 106 - -
Aip08g01387 784 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN-RELATED 147 784 - -
Aip08g01387 784 SMART WD40_4 402 440 IPR001680 GO:0005515
Aip08g01387 784 SMART WD40_4 282 321 IPR001680 GO:0005515
Aip08g01387 784 SMART WD40_4 443 482 IPR001680 GO:0005515
Aip08g01387 784 SMART WD40_4 530 575 IPR001680 GO:0005515
Aip08g01387 784 SMART WD40_4 576 617 IPR001680 GO:0005515
Aip08g01387 784 SMART WD40_4 484 523 IPR001680 GO:0005515
Aip08g01387 784 ProSiteProfiles Trp-Asp (WD) repeats profile. 449 483 IPR001680 GO:0005515
Aip08g01387 784 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 289 322 - -
Aip08g01387 784 MobiDBLite consensus disorder prediction 363 382 - -
Aip08g01387 784 PANTHER WD REPEAT DOMAIN 44 147 784 IPR040324 -
Aip08g01387 784 ProSiteProfiles Trp-Asp (WD) repeats profile. 409 449 IPR001680 GO:0005515
Aip08g01387 784 Gene3D - 387 636 IPR015943 GO:0005515
Aip08g01387 784 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 409 443 - -
Aip08g01387 784 MobiDBLite consensus disorder prediction 684 704 - -
Aip08g01387 784 PANTHER WD REPEAT DOMAIN 44 8 106 IPR040324 -
Aip08g01387 784 MobiDBLite consensus disorder prediction 186 270 - -
Aip08g01387 784 SUPERFAMILY WD40 repeat-like 284 619 IPR036322 GO:0005515
Aip08g01387 784 Gene3D - 228 352 IPR015943 GO:0005515
Aip08g01387 784 MobiDBLite consensus disorder prediction 86 157 - -
Aip08g01387 784 Pfam WD domain, G-beta repeat 404 439 IPR001680 GO:0005515
Aip08g01387 784 Pfam WD domain, G-beta repeat 445 482 IPR001680 GO:0005515
Aip08g01387 784 Pfam WD domain, G-beta repeat 579 617 IPR001680 GO:0005515
Aip08g01387 784 Pfam WD domain, G-beta repeat 288 320 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g01387 Aip-Chr8 22126330 22131810 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g01387 406 617 Miscellaneous Gene Families AT5G08390 22.477 2.54e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g01387 K20241 - gmx:100815065 1016.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g01387 08 22126330 22131810 Aip08g01387 08 22126330 22131810 ECH