Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g01250 ATGGAACGGTTCACCTTGCTTCTGTTATGCTTCTCATTGCTGCATCATACAGCTATTTCTACAATCATAGACACTATTAGTACTACACAGTACCTCACTGATGGTGACACCATGCTTTCAGCTGATGCAAACTTTGCACTTGGATTCTTCGGTATACCAGAAAGTTCCATGAACCGTTACCTTGGAATATGGTACTATAAAGTGCCAACTAGGACAGTGGCATGGGTTGCCAACAGAAACACTCCACTTAATGACTCATTTGGAATCTTGAAGATCACTGACAAAGGAATTCTTGCTCTTCATAGTCATAACAATGCCATCATTTGGCATTCCAACTCGTCAAGATTCGTTCAGCGACCGGTTGCAGTGCTTTTGGATTCAGGGAACCTCATTGTGAAGGAATATGGGAGCAACAACAATGACTTAAAAAGCTTTCTTTGGCAGAGTTTCGATTACCCTTTTGACACAATGCTGCCAGGGATGAAGTTCGGAAGCGACTTAAGTACAGGCTTGAATAGGTACTTAACATCTCAAATTAGCCCCGATGATCAATCTAAAGGTAACTATACTTTTCAGCTTGATATTGTTGGATATCCAGAATTATGTATAAGAAACGGTGAATCCAAGTCCTTTTCTAGTGGATCCTGGAATGGTCTTCGATTTGGTGGAATTCCCCGGTTAAAACAGAATACTATATACCACTACTACTTTGTTTACAGTAAGGAAGAGATATATTATACATTTGAGCTTCTTAATAGCTCAATGTATTCAAGATTTGTGCTATCTGCGAATGGAATCATGACACGTTATGTTTGGAGTTTGAGGAATCAAAGTTGGACACCCTACCTAACATTGCCAAATGATATCTGTGATAGTTATGGTAAATGTGGACCATATGGTAAATGTAATATAGACAACTCCCCTCCATGTGATTGCTTGAGCGGAACTGTACCTAAAGTCCCTGAAGAATGGAATCAGGCAGATTGGTATAATGGTTGTATTAGAAGTAATCCGCTAAGTTGCCATGGAGATGGATTCAAAAAGTTTACTGGTCTGAAGCTGCCTGATACACAGAAAGCATCATGGTTAAATACTAGCATGAGTCTTGACGAGTACGCGAAGTTCTGCCTGAAAAATTGCTCCTGCATGGCTTATGCTGCATTGGATATCAGCAAAGGGGCAAGTGGGTGTTTAATGTGGCATGATGAGCTGATAGATATTAGAGTGCTGAGTGATCCACAACAAGATCTTTATGTTAGAATGTCCAAGAAAGATTCAGATGAAGATGAAAAATCAAAGGGTGGATCTGATATCCCGAAGATGCAGATTATTGTTTGCAGCTCAGTCTTATTTATAGGAATGATGATGATCCTATGCATTTCCTTGATCCTGTATAGAAGAAAGAAAAACCAGAAAAACTATAGGAACATGAGAGGCAACCCAGAAGAGCATCAGGAGGAAGAACTAGATCTACCATATTTTGATATGGCTACTgttgaggagtgttgctag 1512 0.3922 MERFTLLLLCFSLLHHTAISTIIDTISTTQYLTDGDTMLSADANFALGFFGIPESSMNRYLGIWYYKVPTRTVAWVANRNTPLNDSFGILKITDKGILALHSHNNAIIWHSNSSRFVQRPVAVLLDSGNLIVKEYGSNNNDLKSFLWQSFDYPFDTMLPGMKFGSDLSTGLNRYLTSQISPDDQSKGNYTFQLDIVGYPELCIRNGESKSFSSGSWNGLRFGGIPRLKQNTIYHYYFVYSKEEIYYTFELLNSSMYSRFVLSANGIMTRYVWSLRNQSWTPYLTLPNDICDSYGKCGPYGKCNIDNSPPCDCLSGTVPKVPEEWNQADWYNGCIRSNPLSCHGDGFKKFTGLKLPDTQKASWLNTSMSLDEYAKFCLKNCSCMAYAALDISKGASGCLMWHDELIDIRVLSDPQQDLYVRMSKKDSDEDEKSKGGSDIPKMQIIVCSSVLFIGMMMILCISLILYRRKKNQKNYRNMRGNPEEHQEEELDLPYFDMATVEECC 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g01250 503 Pfam D-mannose binding lectin 72 177 IPR001480 -
Aip08g01250 503 ProSiteProfiles PAN/Apple domain profile. 341 422 IPR003609 -
Aip08g01250 503 SMART blect_4 29 153 IPR001480 -
Aip08g01250 503 SMART ntp_6 341 421 IPR003609 -
Aip08g01250 503 Pfam PAN-like domain 341 407 IPR003609 -
Aip08g01250 503 CDD B_lectin 29 153 IPR001480 -
Aip08g01250 503 PANTHER S-LOCUS GLYCOPROTEIN DOMAIN, PAN/APPLE DOMAIN PROTEIN-RELATED 10 500 - -
Aip08g01250 503 ProSiteProfiles Bulb-type lectin domain profile. 23 145 IPR001480 -
Aip08g01250 503 Gene3D - 17 150 IPR036426 -
Aip08g01250 503 Pfam S-locus glycoprotein domain 211 319 IPR000858 GO:0048544
Aip08g01250 503 SUPERFAMILY alpha-D-mannose-specific plant lectins 72 218 IPR036426 -
Aip08g01250 503 Gene3D Hepatocyte Growth Factor 339 421 - -
Aip08g01250 503 PANTHER - 10 500 - -
Aip08g01250 503 CDD PAN_AP_plant 338 420 - -
Aip08g01250 503 PIRSF SLG 1 435 IPR035446 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g01250 Aip-Chr8 18612670 18614527 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g01250 - - aip:110265784 1025.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g01250 08 18612670 18614527 Aip08g01250 08 18612670 18614527 ECH