Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00639 ATGCCTTGGAGTACTTCAAGACCTACCTCAAGTATGAGCCCAACCTTAAACATGAGGGAAGCCGTCCAGCACAAGTTCACCGAGTACTTGCGCCGGGCCGAGGAGATCCGGGCTGTTCTCGATGAAGGACAGCCCAGTCATACCTACTTTCGGCCTGTCGAAAAGCCTGGTGGTAGTGGGACTGGGCTGAACTCAGCGATCAAAAGGGAAAATCCCAATGTGAAGTGGAGTGACGTGGCAGGGTTGGAGAGAGCTAAGCAGGCCTTTCAGGAGGCTGTTATTTTGCCTTTGAAGTTCCCTCAGTTCTTTACTGGTAAACAACAACAACAGAGAACTTTTTTGCTGTATGGACCATCTGGTACAGGGAAATCATATTTGGCTAAAGCCGTTGCAACAGAAGCTAACTTCACATTTTTCAGTGCTTCTTCATCAAACCTTGTATCAAAGTGGAAGAGTGAAAGTGCAAAGTTGGTTTCAAGCCTTTTCCAAACGGCTAGAGAAAATGCTCCTTCTATCATTTTTATTGATGAGATAGATACCCTTTATGGAGAAGGCAATGATAATGAAGCTTCAACAAAAACTAAAACAGAACTTCTCGTACAGATGCAGGATATAGGATACAATGACCAGAAAATTCTGGTTATTGCAACAACAAATGCACCCTTTGCTTTGGACCAGCCAATAAGACGGCGGTTTGAAGCGTATATACATCCCGCTACCAGACTTGAAGGCTCGCCAACACATGTGCATTTAGGAGATACTCCTTACAACTTGACTGAGAGTGATTTTGAATACTTGGCGAGCAGGACAGAGGGGTTTTCTGGTTCAGATATATCCATCTGTGTGGAGGATGTTTTATTGGAACCTATTCGTAAAACCCAAGATGCCATGTTCTTCTATGAGAATCCTGAGGGGATGTGGACCCTTTGTGAACCAGAACAACAAGGTGCTGTGCAAACTACAATGCAGGAGCTTGCTTCAAAAGGACTTTCTTCTAAGATCCTTCCAACCCCAGTTACTAGAACAGATTTTGAGAAGATACTTGCTAGGAAAAAACCTACAGTAAGCAAAGCTGACCTTAAGGTTTATGAAAGATTCACCAAGGAGTATGGAGAGGAAGGTTAA 1125 0.4391 MPWSTSRPTSSMSPTLNMREAVQHKFTEYLRRAEEIRAVLDEGQPSHTYFRPVEKPGGSGTGLNSAIKRENPNVKWSDVAGLERAKQAFQEAVILPLKFPQFFTGKQQQQRTFLLYGPSGTGKSYLAKAVATEANFTFFSASSSNLVSKWKSESAKLVSSLFQTARENAPSIIFIDEIDTLYGEGNDNEASTKTKTELLVQMQDIGYNDQKILVIATTNAPFALDQPIRRRFEAYIHPATRLEGSPTHVHLGDTPYNLTESDFEYLASRTEGFSGSDISICVEDVLLEPIRKTQDAMFFYENPEGMWTLCEPEQQGAVQTTMQELASKGLSSKILPTPVTRTDFEKILARKKPTVSKADLKVYERFTKEYGEEG 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00639 374 PANTHER AAA-TYPE ATPASE FAMILY PROTEIN 17 374 - -
Aip08g00639 374 Pfam Vps4 C terminal oligomerisation domain 307 371 IPR015415 -
Aip08g00639 374 Gene3D - 239 354 - -
Aip08g00639 374 MobiDBLite consensus disorder prediction 47 67 - -
Aip08g00639 374 SUPERFAMILY MIT domain 15 47 IPR036181 -
Aip08g00639 374 SMART AAA_5 109 243 IPR003593 -
Aip08g00639 374 Pfam ATPase family associated with various cellular activities (AAA) 114 236 IPR003959 GO:0005524|GO:0016887
Aip08g00639 374 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 72 370 IPR027417 -
Aip08g00639 374 CDD AAA 80 239 - -
Aip08g00639 374 Gene3D - 72 363 IPR027417 -
Aip08g00639 374 PANTHER AAA DOMAIN-CONTAINING 17 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00639 Aip-Chr8 5963637 5966127 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g00639 70 283 Calmodulin-binding Proteins AT3G56690 38.326 1.99e-31 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00639 K12196 - gmx:100806836 497.278
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g00639 08 5963637 5966127 Aip08g00639 08 5963637 5966127 ECH
Aip08g00639 08 5963637 5966127 Aip03g00230 03 2281538 2285762 ECH