Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00588 ATGGCGGCTGGTTTTGTGGCGTGGGTGGTGGTGTTCTTGTTAGGGGCGGCCACGGCGGCGGTTGGTGGATCTCCGGCGACGCTGAGCTTGGAGAGGGCGTTTCCGACGAATCATGGAGTGGAGCTGAGTCAGCTGAGAGCACGTGACATGCTGAGGCACAGAAGAATGCTTCAGTCCACTAATAATGGGGTCATTGATTTCCAAGTTCAAGGCACCTTCGATCCCTTCCAAGTCGGGTTGTACTATACAAAAGTGCAGTTGGGTTCTCCTCCAGTTGATTTCTATGTGCAGATTGACACTGGCAGTGATGTTCTCTGGGTTAGCTGCACCTCTTGCAGTGGTTGTCCCCAAACAAGTGGCCTTCAGATTCCACTCAATTTCTTCGATGCATCGCGTTCATCGACGTCTTCGATGATCTCTTGCTCAGACCAGAGGTGCAACACTGGAGTTCAATCATCAGATGCAACCTGTTCCAGTCAGGGTAACCAGTGCTCCTATAGTTTCCAGTATGGAGATGGTAGTGGTACATCGGGCTATTATGTTTCGGATTTGATGCATTTCAACACTATTTTTGAGGGATCTGTATCTTCAAATTCCACGGCATCTGTTGTTTTTGGATGTAGCACAGAGCAGAGCGGGGACTTGACAAAGTCCGATAGAGCTGTCGCTGGCATATTTGGATTCGGACAACAAGGTTTGTCTGTTATCTCCCAACTTTCCTCGCAAGGAGTAGCTCCAAATGTGTTCTCTCACTGTCTGAAAGGAGATAGCAGTGGTGGCGGCATATTGGTTCTTGGTGAGATTGTGGAGCCAAACATTGTTTATACTTCACTTGTAGCATCACAGCCACATTACAATTTGAATCTGCAGAGTATCTCTGTCAACGGCCAGAAGTTACAAATTGATTCATCAGTTTTTGCAACATCAAGCAACAAAGGTACCATTGTTGATTCTGGAACAACTTTGGCATATCTTGCCGAGGAAGCTTATGATCCCTTTGTCAATGCGATTACGTCTTCAATTCCACAATCCGTAAGCAGTGTTAATTCCAAGGGAAACCAGTGTTACTTAGTCACTGGCAGTGTGTCTGATATTTTTCCTCAAGTGAGTCTGAACTTTGCGGGAGGTGCATCCATGGATTTAAAACCACAAGACTATCTTATACAGCAGAGTTCTAGTGGTGGTGCAGCAGTATGGTGTATTGGCTTTCAGAAAATCTCTGGTCAAGATGTTACAATTCTAGGAGACCTTGTATTGAAAGACAAAATCGTTGTTTATGATCTTGCTGGTCAACGCCTTGGATGGGCTCCCTATAACTGTGGTTCGTCAGTTAATGTGTCTGCAAATACTGGCACTGGAAGAAGTGAATATGTGAATGCTGGAGAACTAAGTGGCAGCACTTCTTCACATGAAGGACTTAACAAGCTGATAAACATAGGGGTCTTAGCTTTAACACTGATTTGCTACATAGTGATCTTATAG 1482 0.4541 MAAGFVAWVVVFLLGAATAAVGGSPATLSLERAFPTNHGVELSQLRARDMLRHRRMLQSTNNGVIDFQVQGTFDPFQVGLYYTKVQLGSPPVDFYVQIDTGSDVLWVSCTSCSGCPQTSGLQIPLNFFDASRSSTSSMISCSDQRCNTGVQSSDATCSSQGNQCSYSFQYGDGSGTSGYYVSDLMHFNTIFEGSVSSNSTASVVFGCSTEQSGDLTKSDRAVAGIFGFGQQGLSVISQLSSQGVAPNVFSHCLKGDSSGGGILVLGEIVEPNIVYTSLVASQPHYNLNLQSISVNGQKLQIDSSVFATSSNKGTIVDSGTTLAYLAEEAYDPFVNAITSSIPQSVSSVNSKGNQCYLVTGSVSDIFPQVSLNFAGGASMDLKPQDYLIQQSSSGGAAVWCIGFQKISGQDVTILGDLVLKDKIVVYDLAGQRLGWAPYNCGSSVNVSANTGTGRSEYVNAGELSGSTSSHEGLNKLINIGVLALTLICYIVIL 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00588 493 Pfam Xylanase inhibitor C-terminal 284 436 IPR032799 -
Aip08g00588 493 SUPERFAMILY Acid proteases 76 444 IPR021109 -
Aip08g00588 493 Gene3D Acid Proteases 268 447 IPR021109 -
Aip08g00588 493 ProSiteProfiles Peptidase family A1 domain profile. 81 436 IPR033121 -
Aip08g00588 493 CDD pepsin_A_like_plant 81 440 IPR034161 -
Aip08g00588 493 PANTHER ASPARTYL PROTEASES 9 457 IPR001461 GO:0004190|GO:0006508
Aip08g00588 493 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 9 457 - -
Aip08g00588 493 Gene3D Acid Proteases 57 267 IPR021109 -
Aip08g00588 493 PRINTS Pepsin (A1) aspartic protease family signature 87 107 IPR001461 GO:0004190|GO:0006508
Aip08g00588 493 PRINTS Pepsin (A1) aspartic protease family signature 314 325 IPR001461 GO:0004190|GO:0006508
Aip08g00588 493 PRINTS Pepsin (A1) aspartic protease family signature 412 427 IPR001461 GO:0004190|GO:0006508
Aip08g00588 493 Pfam Xylanase inhibitor N-terminal 81 266 IPR032861 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00588 Aip-Chr8 5179455 5183641 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g00588 54 440 Miscellaneous Gene Families AT1G44130 27.612 7.20e-41 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00588 - K00924 gmx:100791299 780.785
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g00588 08 5179455 5183641 Aip08g00588 08 5179455 5183641 ECH
Aip08g00588 08 5179455 5183641 Aip03g00264 03 2615817 2619931 PCT