Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00519 ATGTACAAGAACCAGCTGCAGGAGCTGGCGCAGCGGAGTTGCTTCAACCTGCCGTCGTACACGTGCATTCGGGAAGGTCCCGATCACGCTCCGAGGTTCAAGGCGACGGTGAACTTTAACGGCGAGACCTTCGAGAGCCCTCACTACTGCTCAACGCTACGCCAGGCTGAGCACTCCGCCGCCGAGGTCGCACTCAACTCCCTCTCTCACCGTGGCCCCTCTCACTCCCTCGCCGCTAAGATCCTCGATGAAACTGGAGTATACAAGAACCTCTTACAGGAAATTGCACAAAGGGTAGGGGCACCATTGCCTCTGTACACAACATACAGGTCAGGCTTAGGACATCTACCTGTTTTTACTGGGATGGTAGAATTGGCTGGAATTACATTCACTGGTGAACCAGCCAAGAATAAGAAACAAGCTGAGAAAAATGCAGCAATGGCGGCTTGGTCATCTCTTAAACAATTGGCAAAAGAAACTGCAAGCTCTTCGAATGAACCAGAGATCAATGATGAACTTGAACAGATCACAATAGCACGGGCTTTACTGAACTACCGCCAGAAGGAAAAAATGGCAGTGTCAAATCCAAATGCTTTAATGCCGTTCCAAAAGAAATTTCATATTCAACATCCCAGGGCATCCAGTCCACAACCTCTACCTGCAACTACATCAAAGATCCTTCCCCTAATTTGCCTAAAGACAGCACCTCGAAATAAGCCCTCATTGGCAACCGCAAATGAAGGACCTCGAAGCAGGCATCCTTTAACAGCTAGTGACAGTTCCCTGTTACCACCACAATCTTCTGCACTAGAAAGCCGAGTTGCCCGTCCCATAAAGTTCCCTGCAGCAGGAGCAGCACCATATGTTCCCCTTCGACATATGAGATCATCATGCCATGGAATTGCTCCTGCAGTGAATATACGGTCAGTAGTACCTGTCTATGCTGCACCACCTCTTCCACCACCCGGCACAGTGCCCCAGCAGGTTATAAGGGCTTCTACTGTACAACTTGCTCCTCCGGTCACTATTAGGCAAGCTATTCCAGTATATGCTGCTCCACCAATAAGTAAAGATGAACCTGCTCCTGTTCAGAAGCAAAACCCCCTTACCCCGGTTAAAGAAGAAAAACTGCCACCTAAAATTAAAGAGACGGATGCCAAGTTTGAGAACGCATTAGCAGAATCACGGACAGCACAAATCTTGGAGCAGCTGAAAATTTGA 1221 0.4873 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGETFESPHYCSTLRQAEHSAAEVALNSLSHRGPSHSLAAKILDETGVYKNLLQEIAQRVGAPLPLYTTYRSGLGHLPVFTGMVELAGITFTGEPAKNKKQAEKNAAMAAWSSLKQLAKETASSSNEPEINDELEQITIARALLNYRQKEKMAVSNPNALMPFQKKFHIQHPRASSPQPLPATTSKILPLICLKTAPRNKPSLATANEGPRSRHPLTASDSSLLPPQSSALESRVARPIKFPAAGAAPYVPLRHMRSSCHGIAPAVNIRSVVPVYAAPPLPPPGTVPQQVIRASTVQLAPPVTIRQAIPVYAAPPISKDEPAPVQKQNPLTPVKEEKLPPKIKETDAKFENALAESRTAQILEQLKI 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00519 406 PANTHER - 1 389 - -
Aip08g00519 406 Gene3D - 2 83 - -
Aip08g00519 406 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 87 155 IPR014720 -
Aip08g00519 406 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1 70 IPR014720 -
Aip08g00519 406 MobiDBLite consensus disorder prediction 354 380 - -
Aip08g00519 406 Pfam Double-stranded RNA binding motif 88 153 IPR014720 -
Aip08g00519 406 Pfam Double-stranded RNA binding motif 2 68 IPR014720 -
Aip08g00519 406 SUPERFAMILY dsRNA-binding domain-like 88 158 - -
Aip08g00519 406 SUPERFAMILY dsRNA-binding domain-like 2 68 - -
Aip08g00519 406 CDD DSRM_AtDRB-like_rpt2 86 154 IPR044451 GO:0003725
Aip08g00519 406 Gene3D - 84 155 - -
Aip08g00519 406 CDD DSRM_AtDRB-like_rpt1 1 69 IPR044450 GO:0003725
Aip08g00519 406 MobiDBLite consensus disorder prediction 240 268 - -
Aip08g00519 406 PANTHER DOUBLE-STRANDED RNA-BINDING PROTEIN 2 1 389 - -
Aip08g00519 406 SMART DRBM_3 88 154 IPR014720 -
Aip08g00519 406 SMART DRBM_3 2 69 IPR014720 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00519 Aip-Chr8 4201109 4205180 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00519 - - gmx:100815739 593.578
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g00519 08 4201109 4205180 Aip08g00519 08 4201109 4205180 ECH
Aip08g00519 08 4201109 4205180 Aip03g00346 03 3386410 3389555 PCT