Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00296 ATGAAGAACAGCAACGACGACGACAATAAGCAGCAAAACGAAGACTCTGCTGCCTCCGTAGATTCCCGATTCAACCAGACTCTCAGAAATGTTCAAGGGTTACTCAAGGGTCGTAGCATTCCTGGTAAGATATTACTAAGCCAGAGGGTAGACCTGCCAGATACCCCAAATTCATATTCGCCGCCTTCTTATGAAAGGAGCTCACCATTAAGTGATACCGGCACAAGTGATCACACACCTGAGACACTAGAGGAGGAAGTTCGTAGTACAAGTAAACCAATTGCTTCTCCTAATGAGAATGTGTTAAAATTATCAACTTTACGCATAGAGAACCCGTCTGAAGAAGTGCGGAAATCTTCCGTGAGTGCTAGAGCTACGGATTCTGCAAGAGTGATGAAATTCAATAAGGTGCTCTCCGAGACAATGGTTATATTAGATAAGTTGCGTGAGTTAGCTTGGAGTGGTGTTCCAGATTACATGCGTCCTACAGTATGGAGACTTCTCTTGGGATATGCACCACCTAATTCAGATAGAAGGGATGGGGTTTTGAGGAGGAAGCGCCTAGAGTATCTTGATTGTGTTTCGCAGTATTATGATATTCCTGAGACAGTTCGCTCAGATGATGAGATCAACATGCTCCGCCAGATTGCGGTAGATTGTCCTAGAACCGTACCTGATGTTCCATTCTTCCAGCAACAGCAAGTCCAGAAGTCACTCGAGCGTATTCTTTACACATGGGCTATTCGGCATCCTGCCAGTGGATATGTACAGGGGATAAATGATCTTGTTACACCATTTCTAGTCGTTTTCCTATCAGAACACTTGCAAGGGGGTATCGATAATTGGTCAATGTCTGATCTATCTGCAGAGAAAATTTCTAATATAGAGGCTGATTGCTATTGGTGCTTGTCAAAATTACTGGATGGTATGCAAGACCATTACACATTTGCTCAACCAGGAATTCAGAGGCTTGTTTTTAAGTTGAAGGAATTGGTCAGGAGGATTGATGAGCCTGTTTCAAACCACATGGAGCTTCAGGGACTAGAATTTCTTCAGTTTGCTTTCCGCTGGTTCAACTGCCTGCTAATCCGCGAGATACCCTTCCATCTTGTCACACGCCTCTGGGACACGTATCTAGCTGAAGGAGATGCCTTACCAGATTTCCTTGTGTATATATTTGCCAGTTTTCTTCTAACGTGGTCAGACAAGCTGAAAAAGCTTGATTTCCAGGAGTTGGTAATGTTCCTTCAACACCTTCCAACTCACAGCTGGTCTCACCAGGAGCTCGAGATGGTGCTTTCCCGTGCATTTATGTGGCACAGCATGTTCAACAACTCTCCGAGCCATTTAGCCACTTGA 1359 0.4444 MKNSNDDDNKQQNEDSAASVDSRFNQTLRNVQGLLKGRSIPGKILLSQRVDLPDTPNSYSPPSYERSSPLSDTGTSDHTPETLEEEVRSTSKPIASPNENVLKLSTLRIENPSEEVRKSSVSARATDSARVMKFNKVLSETMVILDKLRELAWSGVPDYMRPTVWRLLLGYAPPNSDRRDGVLRRKRLEYLDCVSQYYDIPETVRSDDEINMLRQIAVDCPRTVPDVPFFQQQQVQKSLERILYTWAIRHPASGYVQGINDLVTPFLVVFLSEHLQGGIDNWSMSDLSAEKISNIEADCYWCLSKLLDGMQDHYTFAQPGIQRLVFKLKELVRRIDEPVSNHMELQGLEFLQFAFRWFNCLLIREIPFHLVTRLWDTYLAEGDALPDFLVYIFASFLLTWSDKLKKLDFQELVMFLQHLPTHSWSHQELEMVLSRAFMWHSMFNNSPSHLAT 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00296 452 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 132 342 IPR035969 -
Aip08g00296 452 MobiDBLite consensus disorder prediction 47 99 - -
Aip08g00296 452 SMART tbc_4 152 408 IPR000195 -
Aip08g00296 452 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 192 316 - -
Aip08g00296 452 MobiDBLite consensus disorder prediction 51 77 - -
Aip08g00296 452 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 5 449 - -
Aip08g00296 452 MobiDBLite consensus disorder prediction 1 24 - -
Aip08g00296 452 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 318 440 IPR035969 -
Aip08g00296 452 ProSiteProfiles TBC/rab GAP domain profile. 155 382 IPR000195 -
Aip08g00296 452 Gene3D - 130 180 - -
Aip08g00296 452 Gene3D - 317 452 - -
Aip08g00296 452 Pfam Rab-GTPase-TBC domain 159 403 IPR000195 -
Aip08g00296 452 PANTHER RAB-GTPASE-TBC DOMAIN-CONTAINING PROTEIN-RELATED 5 449 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00296 Aip-Chr8 2205498 2209164 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00296 K20360 - gmx:100785695 753.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g00296 08 2205498 2209164 Aip08g00296 08 2205498 2209164 ECH
Aip08g00296 08 2205498 2209164 Aip03g00658 03 6458774 6462492 PCT