Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00293 ATGAAAATGGGAAACAAGTTACCATTGATACTTGTGGCCATGGCACTTGTCATGATTGCGAGTGTTAGTGCTCAAAATTGTGGATGTGCATCGGGTTTGTGTTGTAGCAAGTACGGATACTGTGGCACCGGCGACGCTTATTGCGGCGACGGATGCCAAGAGGGTCCTTGCTACAGCTCACCAAGCACTCCGAGCACTCCTAGCTCCGGCAGCGGTGGTGTTAACGTGGCCGACGTAGTCACACAAGATTTCTTCAATTCTATAATCAACCAAGCTTCTGCTAATTGTGAAGGCAAAAATTTCTACACTCGCGACGCTTTTCTTAGCGCTCTCAACTCCTACAGTACTTTTGGTCAGCTTAGCTCAACCGACGACTCTAAGCGCGAAATTGCAGCTGCCTTTGCTCATTTTACACACGAAACTGGCTATTTTTGCTATATTAATGAGCAAAATGGTGCATCACACAACTATTGTGACTCAAGCTACACACAATATCCATGCAACCCTAACAAGCAATACTTTGGTCGTGGACCTCTCCAACTAACATGGAACTACAACTACGGAGCGGCCGGAAACGCGAACAATTTCGACGGATTGAATGCGCCGGAGACGGTGGGGAATGATGCCGTGGTGTCATTCAAGGCGGCGTTGTGGTTTTGGATAAACAATGTAAGGTCAGTTGAGAGCCAGGGGTTTGGTGCAACCATTAGGGCCATTAATAGTGGTGAATGCAATGGTGGTAACACTTCGGAGATGAACGATCGTGTGAACCTATACAAACAATACTGTCAAGATTTCGGTGTTGCTCCTGGTGATAATCTTACTTGTTAA 831 0.4657 MKMGNKLPLILVAMALVMIASVSAQNCGCASGLCCSKYGYCGTGDAYCGDGCQEGPCYSSPSTPSTPSSGSGGVNVADVVTQDFFNSIINQASANCEGKNFYTRDAFLSALNSYSTFGQLSSTDDSKREIAAAFAHFTHETGYFCYINEQNGASHNYCDSSYTQYPCNPNKQYFGRGPLQLTWNYNYGAAGNANNFDGLNAPETVGNDAVVSFKAALWFWINNVRSVESQGFGATIRAINSGECNGGNTSEMNDRVNLYKQYCQDFGVAPGDNLTC 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00293 276 CDD ChtBD1 29 53 - -
Aip08g00293 276 ProSitePatterns Chitin recognition or binding domain signature. 29 48 IPR018371 GO:0008061
Aip08g00293 276 PRINTS Chitin-binding domain signature 27 35 IPR001002 GO:0008061
Aip08g00293 276 PRINTS Chitin-binding domain signature 35 42 IPR001002 GO:0008061
Aip08g00293 276 PRINTS Chitin-binding domain signature 42 49 IPR001002 GO:0008061
Aip08g00293 276 SUPERFAMILY Lysozyme-like 75 276 IPR023346 -
Aip08g00293 276 PANTHER CHITINASE-RELATED 9 276 - -
Aip08g00293 276 Pfam Chitinase class I 79 223 IPR000726 GO:0004568|GO:0006032|GO:0016998
Aip08g00293 276 Pfam Chitinase class I 230 276 IPR000726 GO:0004568|GO:0006032|GO:0016998
Aip08g00293 276 Gene3D - 21 59 IPR036861 GO:0008061
Aip08g00293 276 PANTHER ENDOCHITINASE EP3-LIKE 9 276 - -
Aip08g00293 276 PIRSF Endochitinase 1 276 IPR016283 GO:0004568|GO:0005975
Aip08g00293 276 Pfam Chitin recognition protein 24 57 IPR001002 GO:0008061
Aip08g00293 276 CDD chitinase_GH19 80 276 - -
Aip08g00293 276 Gene3D - 74 276 - -
Aip08g00293 276 SUPERFAMILY Plant lectins/antimicrobial peptides 22 63 IPR036861 GO:0008061
Aip08g00293 276 Gene3D Endochitinase, domain 2 150 206 - -
Aip08g00293 276 ProSitePatterns Chitinases family 19 signature 2. 211 221 IPR000726 GO:0004568|GO:0006032|GO:0016998
Aip08g00293 276 ProSitePatterns Chitinases family 19 signature 1. 96 118 IPR000726 GO:0004568|GO:0006032|GO:0016998
Aip08g00293 276 SMART ChitinBD_3 26 57 IPR001002 GO:0008061
Aip08g00293 276 ProSiteProfiles Chitin-binding type-1 domain profile. 24 59 IPR001002 GO:0008061
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00293 Aip-Chr8 2191224 2192511 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g00293 9 276 Glycoside Hydrolase AT3G54420 59.926 1.12e-119 342
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00293 K01183 - pop:7467474 392.889
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g00293 08 2191224 2192511 Aip08g00293 08 2191224 2192511 ECH
Aip08g00293 08 2191224 2192511 Aip03g00662 03 6493492 6495258 PCT