Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00270 ATGTTTTCAGGGGTAGCCGGAATACTCAACCGAGGCCACAAGATCAAAGGGACTGTGGTCTTGATGCGCAAGAATGTCCTGGACGTTGACACCTTTACTGATGTTGCTGCCACCGCCAACATCGGAGGCCTCATTGGCACCGGCATCAACGTCATTGGCTCCACCGTTGACGCCCTCACCGCCTTTTTAGGCCGCAGTGTCTCCCTCCAGCTCATCAGTTCTACTCAATCCGATGAGAATGGCAACGGAAAAGTTGTAAAGGATACATTTCTGGAAGGTATTATTGCGTCGTTACCAACGTTAGGAGCTGGAGAATCTGCATTCAGCATTCATTTTGAATGGGACGATAGCATGGGAATCCCTGGTGCATTTTACATCAAGAACTATATGCAAGTTGAGTTTTTCCTCAAGACCTTAACTCTTGAAGATGTTCCAAACCAAGGAACCATCCATTTTGTTTGCAACTCTTGGGTTTACAACTCTAAACTCTACAAATCCCCCCGCATTTTCTTCTCCAACAAGCCATATCTTCCAAGTGAAACACCTGCTCCACTTGTTAAGTACAGAGAAGAAGACCTGAAAATTTTAAGAGGTGATGGAAAAGGGGAGCGTCAGGAGCATGAAAGAATTTATGATTATGATGTCTACAATGATTTGGGGAATCCGGATCGGAACGAAAACCATGCTCGCCCCATCCTTGGAGGTTCTACCACTTTCCCTTACCCTCGCAGGGGAAGAACTGGTAGATATCCTGCAAGAAATGATCCTAACAGTGAGAAACCAGGGGATGTTTATGTTCCCAGAGATGAAAACTTTGGGCACCTGAAATCTTCGGACTTCCTTGCAAATTCAATAAAATTTTTGACTCGGTATGTGCTGCCAGCTTTTGAATCTGTGTTCGATTTGAATTTGACCCCAAATGAGTTTGATAGCTTCCAAGATGTTCGTGATCTCTATGAAGGCGGAATTAGGCTACCTACGGAAGTAATTAGCACAATTAGCCCCTTACCTGTCATCAAAGAACTCTTCCGTACCGATGGCGAACAAGTCCTCAAGTTTCCACCACCTCACATCATTCAAGTGAATAAATCTGCATGGATGACTGATGAAGAATTCGCAAGAGAAATGATTGCTGGTGTAAATCCTTGCATGATTCGTAGTCTTCAAGAGTTTCCTCCGAAAAGCAATTTGGATCCCACAATCTATGGTGATCAAAACAGTAAGATACCTGCAGAAGTTCTTGATCTTGAAGGGTGCTCACTAGAAGAGGCAATTAATGGTCGGAGACTATTTATATTAGATTACCATGATGTGTTCATGCCATATGTGAGGCGAATAAATGAGACCCATGCAAAAGCATATGCCACTAGGACTATCCTTTTTCTGAAAGAGGATGGAACATTGAAGCCAGTGGCCATTGAATTAAGTTTGCCACATCCTGATGGAGATAAATCAGGTGCTATCAGTGAAGTTATCTTACCTGCAAAGGAAGGTGTTGAAAGCACAATTTGGCTACTAGCCAAAGCTTATGTCATAGTAAATGACTCATGCTACCATCAACTGATGAGCCATTGGTTGAATACTCATGCAGTTATTGAGCCATTTGTGATAGCAACAAATAGACAGCTAAGTGTGATTCACCCAATTTATAAACTTTTATCTCCACACTACCGTGACACTATGAACATCAATGCACTTGCTAGGCAGAATCTGATTAATTCTGATGGCATAATAGAAAGAACCTTCTTGCCCTCCAAGTTTTCTGTGGAGATGTCTTCAGCTGTTTATAAGAACTGGGTTTTCACTGATCAAGCACTACCTGCTGATCTCATCAAGAGAGGAATGGCAGTGGAGGATTCATCTTCTCCTTATGGAATTCGTCTTGTAATAGAAGACTACCCTTATGCTGTTGATGGACTAGAGATATGGTTTGCCATTAAGGAATGGGTTCAAGATTATGTCTCATTGTACTATCCAACAGACAATGATCTCAAAAAAGACCCTGAACTCCAAAATTGGTGGAAAGAAGCTGTTGAGGTAGGTCATGGTGATTTGAAAGATAAGCCATGGTGGCCAAAGATGCAGACAGTTGAAGAGTTAGTTGAATCATGCACAACCATAATATGGACGGCGTCGGCGCTCCATGCAGCTGTTAATTTTGGACAGTATCCATATGGAGGGCTTATCCTGAACCGTCCAACACTTAGCAGAAGATTGCTTCCTGAACAAGGCACTGCAGAGTATGAAGAGATGGTGAAGAGTCACCAAAAGGCTTATCTGAGAACAATTACACCGAAATTAGAGACTCTTATTGACCTTACAACCATAGAAATCTTATCAAAGCATGCTTCTGATGAGGTGTATCTTGGAGAGAGGGATAATCCACATTGGACATTTGATTCAAGAGCATTAGAAGCATTTCAGAGATTTGGGAACAAACTGAGTGAGATTGAGGAGAAGCTAACAGAGAAGAACAAAGATGGGAGACTGAGTAATAGAATTGGGCCAGTTGAATTGCCATACACTCTGCTTCATCCTACTAGCAATGAAGGGTTGACTTTTAGAGGAGTTCCAAACAGCATCTCTATCTAA 2592 0.424 MFSGVAGILNRGHKIKGTVVLMRKNVLDVDTFTDVAATANIGGLIGTGINVIGSTVDALTAFLGRSVSLQLISSTQSDENGNGKVVKDTFLEGIIASLPTLGAGESAFSIHFEWDDSMGIPGAFYIKNYMQVEFFLKTLTLEDVPNQGTIHFVCNSWVYNSKLYKSPRIFFSNKPYLPSETPAPLVKYREEDLKILRGDGKGERQEHERIYDYDVYNDLGNPDRNENHARPILGGSTTFPYPRRGRTGRYPARNDPNSEKPGDVYVPRDENFGHLKSSDFLANSIKFLTRYVLPAFESVFDLNLTPNEFDSFQDVRDLYEGGIRLPTEVISTISPLPVIKELFRTDGEQVLKFPPPHIIQVNKSAWMTDEEFAREMIAGVNPCMIRSLQEFPPKSNLDPTIYGDQNSKIPAEVLDLEGCSLEEAINGRRLFILDYHDVFMPYVRRINETHAKAYATRTILFLKEDGTLKPVAIELSLPHPDGDKSGAISEVILPAKEGVESTIWLLAKAYVIVNDSCYHQLMSHWLNTHAVIEPFVIATNRQLSVIHPIYKLLSPHYRDTMNINALARQNLINSDGIIERTFLPSKFSVEMSSAVYKNWVFTDQALPADLIKRGMAVEDSSSPYGIRLVIEDYPYAVDGLEIWFAIKEWVQDYVSLYYPTDNDLKKDPELQNWWKEAVEVGHGDLKDKPWWPKMQTVEELVESCTTIIWTASALHAAVNFGQYPYGGLILNRPTLSRRLLPEQGTAEYEEMVKSHQKAYLRTITPKLETLIDLTTIEILSKHASDEVYLGERDNPHWTFDSRALEAFQRFGNKLSEIEEKLTEKNKDGRLSNRIGPVELPYTLLHPTSNEGLTFRGVPNSISI 863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00270 863 Gene3D PLAT/LH2 domain 4 176 - -
Aip08g00270 863 MobiDBLite consensus disorder prediction 224 264 - -
Aip08g00270 863 SUPERFAMILY Lipoxigenase 177 863 IPR036226 -
Aip08g00270 863 PANTHER LIPOXYGENASE 1 863 IPR000907 GO:0016702|GO:0046872
Aip08g00270 863 ProSitePatterns Lipoxygenases iron-binding region signature 1. 519 533 IPR020833 GO:0016702|GO:0046872
Aip08g00270 863 Gene3D - 177 275 - -
Aip08g00270 863 ProSitePatterns Lipoxygenases iron-binding region signature 2. 546 556 IPR020834 GO:0016702|GO:0046872
Aip08g00270 863 PRINTS Lipoxygenase signature 501 518 IPR013819 GO:0016702|GO:0046872
Aip08g00270 863 PRINTS Lipoxygenase signature 519 536 IPR013819 GO:0016702|GO:0046872
Aip08g00270 863 PRINTS Lipoxygenase signature 539 559 IPR013819 GO:0016702|GO:0046872
Aip08g00270 863 ProSiteProfiles PLAT domain profile. 47 172 IPR001024 GO:0005515
Aip08g00270 863 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 12 176 IPR036392 GO:0005515
Aip08g00270 863 PRINTS Plant lipoxygenase signature 142 160 IPR001246 GO:0016491
Aip08g00270 863 PRINTS Plant lipoxygenase signature 168 189 IPR001246 GO:0016491
Aip08g00270 863 PRINTS Plant lipoxygenase signature 207 223 IPR001246 GO:0016491
Aip08g00270 863 PRINTS Plant lipoxygenase signature 240 259 IPR001246 GO:0016491
Aip08g00270 863 PRINTS Plant lipoxygenase signature 306 327 IPR001246 GO:0016491
Aip08g00270 863 PRINTS Plant lipoxygenase signature 351 367 IPR001246 GO:0016491
Aip08g00270 863 PRINTS Plant lipoxygenase signature 390 409 IPR001246 GO:0016491
Aip08g00270 863 PRINTS Plant lipoxygenase signature 454 478 IPR001246 GO:0016491
Aip08g00270 863 PRINTS Plant lipoxygenase signature 776 790 IPR001246 GO:0016491
Aip08g00270 863 Pfam PLAT/LH2 domain 81 171 IPR001024 GO:0005515
Aip08g00270 863 Gene3D - 276 364 IPR027433 -
Aip08g00270 863 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 175 863 IPR013819 GO:0016702|GO:0046872
Aip08g00270 863 CDD PLAT_LH2 13 173 IPR042057 -
Aip08g00270 863 Pfam Lipoxygenase 185 846 IPR013819 GO:0016702|GO:0046872
Aip08g00270 863 Gene3D - 365 496 - -
Aip08g00270 863 Gene3D - 497 862 - -
Aip08g00270 863 SMART LH2_4 13 173 IPR001024 GO:0005515
Aip08g00270 863 PANTHER SEED LINOLEATE 13S-LIPOXYGENASE-1 1 863 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00270 Aip-Chr8 2037642 2041492 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g00270 1 863 Acyl Lipid Metabolism Gene Families AT1G55020 56.787 0.0 1010
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00270 K15718 - gmx:547774 1459.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g00270 08 2037642 2041492 Aip09g01185 09 17994048 18001464 PCT