Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip08g00239 ATGGTGAGCATGAGCTTCAAGCTCATAATGTGGAATGTGCTTCTTCCCTTGCTGCTCCTGGCATCTTCATTCTTTGTTTCTTGTAATGCTTCTGTGTCCTATGACTCAAAGGCTATCACCATTAATGGCCAAAGAAGGATCCTCATTTCTGGATCCATTCATTACCCTAGAAGCACCCCTGAGATGTGGCCAGATCTCATTCAAAAGGCTAAGGAAGGAGGTTTGGATGTGATTCAGACTTATGTTTTCTGGAATGGCCATGAACCTTCACCTGGCAAATATTATTTTGAGGGAAACTATGATCTGGTGAAGTTCATAAAGTTGGTGCAGCAAGCAGGCCTTTATGTGCATCTAAGGATTGGTCCTTATGTCTGTGCTGAGTGGAACTTTGGGGGTTTCCCTGTTTGGCTGAAGTACATTCCAGGTATCAGCTTCAGAACAGACAATGGCCCTTTTAAGTTTCAAATGCAAAAGTTTACCACGAAGATTGTCGATATGATGAAGGCAGAAAGATTATATGAAACTCAGGGAGGTCCAATAATTCTATCCCAGATTGAAAATGAATATGGACCTATGGAGTATGAAATTGGTGCTTCTGGTAAGTCCTACACTAAGTGGGCAGCAGATATGGCTGTAGGACTTGGTACTGGGGTTCCATGGGTCATGTGCAAACAAGATGATGCTCCTGATCCTATGATTAACACTTGCAATGGTTTCTATTGTGATTACTTCTCTCCAAATAAGGCTTACAAACCAAAGATGTGGACGGAAGCTTGGACTGCATGGTTTACTGAATTTGGAGGTTCGGTTCCTTATCGACCTGCTGAAGATTTAGCATTTGCAGTTGCAAGATTTATACAGAAAGGGGGAGCATTTGTCAATTATTACATGTATCACGGGGGAACAAATTTCGGTAGAACTGCTGGTGGTCCATTTATTGCTACAAGCTATGATTATGATGCACCTATTGATGAATATGGACTTCTCAGGCAGCCGAAGTGGGGTCATCTTAAAGATTTACATAGAGCAATAAAACTCTGTGAACCTGCTTTAGTTTCGGGGGATCCTGCTGTAACAAAGATTGGAAACTATCAAGAGGCTCATGTCTTCAAATCAGACTCAGGAGCTTGTGCTGCATTCCTTGCAAACTATGACCCAAAATCTTTTGCAAAAGTGGCATTTGGGAATATGCACTATAACCTGCCTCCTTGGTCTATTAGCATTCTTCCTGACTGCAAGAACACTGTTTATAACACTGCACGGGTTGGTTCACAGAAGGCACAGATGAAGATGACTCGAATTCCCATTCATGGAGGACTCACTTGGCAATCATTTAATGAAGAACCAGCATCTACTGATGACAGTTCCTTCACCATGACTGGCCTATTGGAACAGTTAAATACAACTAGAGATTTATCTGACTACCTTTGGTACTCCACAGATGTTGTGATTGATTCCAATGAAGGATTTTTGTGGAATGGAAAGGATCCTGTTCTTACAGTGTTATCTGCTGGGCATGCCTTGCATGTGTTTGTCAATGGTCAGCTATCAGGAACTGCTTATGGAAGCTTAGAATTCCCCAAACTAACATTTAGCCAGGCTGTGAAGCTCAGAGCTGGTGTTAATAAAATCTCTCTTCTAAGTGTTGCAGTTGGACTACCGAATGTTGGTCCACATTTTGAAACATGGAATGCTGGTGTTCTTGGCCCAATTACATTATACGGTCTCAACGAGGGGAGAAGGGACTTGTCTTGGCAGAAATGGTCTTATAAGATTGGTCTTAAAGGAGAAGCCTTGAGTCTCCATTCTCTCAGTGGAATTTCCTCAGTTGACTGGATTCAAGGGTCTTTAATTTCTCAAAGGCAGCCACTGACTTGGTACAAAACTACTTTTGATGCTCCGGCTGGAACCGCACCATTTGGTTTAGATATGGGCAGCATGGGCAAAGGTCAAGTGTGGCTAAATGGGCAGAGTCTCGGTCGCTACTGGCCTGCTTATAAAGCATCAGGTACCTGTGATTCTTGTGACTATGCCGGAACTTACAACGAGAATAAATGCAGAAGTAACTGTGGGGAGGCTTCTCAAACATGGTATCATGTTCCTCATTCATGGCTAAAGCCAACTGGAAATTTATTGGTTGTGTTTGAAGAACTGGCTGGAGATCCCAATGGCATCTTTCTGGTTAGGCGCGACATAGATAGTGTGTGTGCTGATATTTATGAGTGGCAGCCAAATCTTAGAAGCTACCAGATGCAAGCTTCTGGCAAAGCTGACAAACCTATTAGGCCTAAAGTGCATTTATCATGTGGCTTTGGACAAAAGATCTCGTCGATCAAATTCGCTAGCTTCGGTACTCCAGAAGGATCTTGTGGAAACTTCCATGAAGGAAGCTGCCATGCTCACAAATCATATGATGCATTTCAAAGGAATTGTGTTGGACAGAGCTGGTGCACTGTAACAGTGTCACCCGAAAATTTCGGAGGAGATCCATGTCCAAATGTTATGAAGAAACTCTCAGTGGAGGCTATATGTACCTGA 2538 0.4287 MVSMSFKLIMWNVLLPLLLLASSFFVSCNASVSYDSKAITINGQRRILISGSIHYPRSTPEMWPDLIQKAKEGGLDVIQTYVFWNGHEPSPGKYYFEGNYDLVKFIKLVQQAGLYVHLRIGPYVCAEWNFGGFPVWLKYIPGISFRTDNGPFKFQMQKFTTKIVDMMKAERLYETQGGPIILSQIENEYGPMEYEIGASGKSYTKWAADMAVGLGTGVPWVMCKQDDAPDPMINTCNGFYCDYFSPNKAYKPKMWTEAWTAWFTEFGGSVPYRPAEDLAFAVARFIQKGGAFVNYYMYHGGTNFGRTAGGPFIATSYDYDAPIDEYGLLRQPKWGHLKDLHRAIKLCEPALVSGDPAVTKIGNYQEAHVFKSDSGACAAFLANYDPKSFAKVAFGNMHYNLPPWSISILPDCKNTVYNTARVGSQKAQMKMTRIPIHGGLTWQSFNEEPASTDDSSFTMTGLLEQLNTTRDLSDYLWYSTDVVIDSNEGFLWNGKDPVLTVLSAGHALHVFVNGQLSGTAYGSLEFPKLTFSQAVKLRAGVNKISLLSVAVGLPNVGPHFETWNAGVLGPITLYGLNEGRRDLSWQKWSYKIGLKGEALSLHSLSGISSVDWIQGSLISQRQPLTWYKTTFDAPAGTAPFGLDMGSMGKGQVWLNGQSLGRYWPAYKASGTCDSCDYAGTYNENKCRSNCGEASQTWYHVPHSWLKPTGNLLVVFEELAGDPNGIFLVRRDIDSVCADIYEWQPNLRSYQMQASGKADKPIRPKVHLSCGFGQKISSIKFASFGTPEGSCGNFHEGSCHAHKSYDAFQRNCVGQSWCTVTVSPENFGGDPCPNVMKKLSVEAICT 845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip08g00239 845 Pfam Galactose binding lectin domain 767 844 IPR000922 GO:0030246
Aip08g00239 845 Pfam Glycosyl hydrolases family 35 39 343 IPR031330 -
Aip08g00239 845 Pfam Beta-sandwich domain in beta galactosidase 351 422 IPR041392 -
Aip08g00239 845 Gene3D - 761 845 IPR043159 -
Aip08g00239 845 PANTHER BETA-GALACTOSIDASE RELATED 10 839 IPR001944 GO:0004553|GO:0005975
Aip08g00239 845 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 28 - -
Aip08g00239 845 SUPERFAMILY Galactose-binding domain-like 406 577 IPR008979 -
Aip08g00239 845 ProSiteProfiles SUEL-type lectin domain profile. 759 845 IPR000922 GO:0030246
Aip08g00239 845 SUPERFAMILY (Trans)glycosidases 31 348 IPR017853 -
Aip08g00239 845 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 177 189 IPR019801 GO:0004553|GO:0005975
Aip08g00239 845 Gene3D Glycosidases 28 348 - -
Aip08g00239 845 PANTHER BETA-GALACTOSIDASE 10 839 - -
Aip08g00239 845 Gene3D - 607 735 - -
Aip08g00239 845 SUPERFAMILY Galactose-binding domain-like 586 751 IPR008979 -
Aip08g00239 845 PRINTS Glycosyl hydrolase family 35 signature 42 59 IPR001944 GO:0004553|GO:0005975
Aip08g00239 845 PRINTS Glycosyl hydrolase family 35 signature 63 81 IPR001944 GO:0004553|GO:0005975
Aip08g00239 845 PRINTS Glycosyl hydrolase family 35 signature 118 137 IPR001944 GO:0004553|GO:0005975
Aip08g00239 845 PRINTS Glycosyl hydrolase family 35 signature 175 190 IPR001944 GO:0004553|GO:0005975
Aip08g00239 845 PRINTS Glycosyl hydrolase family 35 signature 254 269 IPR001944 GO:0004553|GO:0005975
Aip08g00239 845 PRINTS Glycosyl hydrolase family 35 signature 291 306 IPR001944 GO:0004553|GO:0005975
Aip08g00239 845 PRINTS Glycosyl hydrolase family 35 signature 311 327 IPR001944 GO:0004553|GO:0005975
Aip08g00239 845 PRINTS Glycosyl hydrolase family 35 signature 622 636 IPR001944 GO:0004553|GO:0005975
Aip08g00239 845 PRINTS Glycosyl hydrolase family 35 signature 649 665 IPR001944 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip08g00239 Aip-Chr8 1720122 1725584 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip08g00239 5 844 Glycoside Hydrolase AT3G13750 78.810 0.0 1429
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip08g00239 - - gmx:100811187 1611.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip08g00239 08 1720122 1725584 Aip08g00239 08 1720122 1725584 ECH
Aip08g00239 08 1720122 1725584 Aip09g00630 09 7415674 7422239 PCT