Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g03396 ATGGGTGGCACTGGCACCGTTGTTTCTCACTTCCTCAATCTATCATCATCTTCTTCTTCTTATTCTCCACGCTTGCTTGCTCCTTCACTGTCGTGTGCTGCTTCAACCCTCCTTCATTCTCGCTTCTCACTCCCTTCTATTCGCTCTTGCACTTCCTCTGCCACCGCCGCACCTTCTACTTCTTCAGACCCGATCACTCCTCCAACCCCTCTCAAGAAAAGGGTAGTCTCGGGAGTGCAGCCAACTGGGTCAATTCACCTTGGAAACTATTTTGGAGCCATCAAGAATTGGGTTGCACTTCAGAATACATATGATACACTTTTCTTCATTGTAGACCTCCACGCGATTACATTACCTTATGAAGCACAACAATTATCTAAGGCTTCAAGGTCAACTGCAGCTATTTATCTGGCATGTGGAGTGGATCCTTCTAAGGCTTCTGTTTTTGTACAGTCTCATGTTCGGGCACATGTAGAATTGATGTGGTTGCTAAGTTCTGCAACACCAATTGGTTGGCTGAACAAAATGATACAGTTCAAAGAGAAATCTCGCAAGGCGGGTGATGAAGAAGTTGGAGTTGCCCTTTTGACTTATCCTGTTCTGATGGCTTCTGATATACTTCTATATCAGTCTGATTTTGTCCCTGTTGGTGAAGATCAAAAGCAGCACTTGGAGTTGACTCGTGACTTAGCAGAACGGGTTCCGGAGCCCCTTATACCTCCAGCTGGAGCCCGAATTATGTCCCTAACAGATGGCCTTTCTAAGATGTCAAAGTCTGCACCTTCTGATCAATCGAGAATCAATTTGCTTGATCCTAAAGATCTTATAGCAAACAAGATCAAACGTTGCAAAACTGATGCATTTCCAGGATTGGAGTTTGATAATCCTGAGAGGCCAGAATGTAACAATCTTCTTTCCATATACCAGCTCATTTCGGGAAAGACAAAAGAGGAAGTTGTTCAGGAGTGCCAAAACATGAACTGGGGCACATTCAAAACTCTCTTAACAGATGCCTTGATTGATCATTTGCATCCAATTCAGGTTCGCTATGATGAAATCATGTCCGAATCGGGTTACTTAGATGAAGTTTTAGCAGAAGGTGCTAGAAATGCATCAGAAATAGCAGATGCCACTGTCAATAATGTTTACCAAGCAATGGGATTTTTGGGGAGAAGGTGA 1179 0.4368 MGGTGTVVSHFLNLSSSSSSYSPRLLAPSLSCAASTLLHSRFSLPSIRSCTSSATAAPSTSSDPITPPTPLKKRVVSGVQPTGSIHLGNYFGAIKNWVALQNTYDTLFFIVDLHAITLPYEAQQLSKASRSTAAIYLACGVDPSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSRKAGDEEVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRDLAERVPEPLIPPAGARIMSLTDGLSKMSKSAPSDQSRINLLDPKDLIANKIKRCKTDAFPGLEFDNPERPECNNLLSIYQLISGKTKEEVVQECQNMNWGTFKTLLTDALIDHLHPIQVRYDEIMSESGYLDEVLAEGARNASEIADATVNNVYQAMGFLGRR 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g03396 392 Pfam tRNA synthetases class I (W and Y) 74 343 IPR002305 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Aip07g03396 392 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 81 90 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Aip07g03396 392 SUPERFAMILY Nucleotidylyl transferase 73 388 - -
Aip07g03396 392 Hamap Tryptophan--tRNA ligase [trpS]. 72 389 IPR024109 GO:0004830
Aip07g03396 392 PRINTS Tryptophanyl-tRNA synthetase signature 85 101 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Aip07g03396 392 PRINTS Tryptophanyl-tRNA synthetase signature 135 154 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Aip07g03396 392 PRINTS Tryptophanyl-tRNA synthetase signature 212 233 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Aip07g03396 392 PRINTS Tryptophanyl-tRNA synthetase signature 255 265 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Aip07g03396 392 PANTHER TRYPTOPHAN--TRNA LIGASE, MITOCHONDRIAL 66 234 - -
Aip07g03396 392 PANTHER BNAA04G15180D PROTEIN 66 234 - -
Aip07g03396 392 PANTHER BNAA04G15180D PROTEIN 233 388 - -
Aip07g03396 392 TIGRFAM trpS: tryptophan--tRNA ligase 72 388 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Aip07g03396 392 PANTHER TRYPTOPHAN--TRNA LIGASE, MITOCHONDRIAL 233 388 - -
Aip07g03396 392 CDD TrpRS_core 74 340 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Aip07g03396 392 Gene3D - 248 358 - -
Aip07g03396 392 Gene3D HUPs 75 387 IPR014729 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip07g03396 K01867 - gmx:100780447 605.134