Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g03378 ATGCTTAATAATACACAAAGACAAAGGCATTTTGAAAAGGAGATATCAACAGCCTCCCTCAAATTTCAGTCTTTTAGAGCGATACATTATCGTTTGTTAATGGAAAATCTAGGCACTTTGGAACAAACTTTCGCTGATTCTGAGGCGATTAAATTGAAAAGTGACATTGTATTGCAACTTGGAAAGCTTGGAGCTCTGGAATTGTTCAATGTCTGTCTGTCGAGGTCTCTTGAACTGTCGTCACATGCCGTTGAACTCGGAGAGCACCAGAAGGAAAACAGGAAAATAGATGAGAAGATAGATAAAGTGTTTGTTAAGTCTACCAGGAAAAAACAGCATAAAAGAAGAACTCAGAAAGCATTTACTGCTATGGAAGTTCGGCTGCAGCCGTCGACTTCAAAAGCTGATGATAAGGAATATAGATTGCATTCCCTTCCTGCTTCTGTAAAGAAAGCTTCAAATCGTAAAAATACAAGAATAATGGTTGCTAGAAGGGAGGCAGAAATGTCAAAAGGAGTAAAGGTTCTCGCAGAGTTGGAGAAAATTCGAGAAGGAATAGAAGAGAGTACAAATCAAGTAGCAAGCTTGAAAAGCTGGGCAGAAGCAGCTGGAGTTCATGAGAAGGTGCTACAGCAGAAGTTGCATTACTGCCAACGTTGTCGTGACGAGCTTATACGAAGTACTCGTTCCTTGGTTGTTTACCTTGCAAGGAAGTACAGGGGTATGGGAATAGCACTGGAAGATCTACTTCAGGCAGGATATATAGGTGTTCTCCAGGGAGCTGTGAGATTTGACTATACAAGGGGTTATAGATTCTCAACTTATGTGCAGTATTGGATAAGGAAATCAATTTCCAGAATGGTGGAACGATATGCTCGAGAAATCGTAGTTCCTTGGTCATTGAGCAGGGCCATGAATCAGATACAGAAAGCACAAAAATCCCTGAAAATTACCTCCATGAAAAGCCCAGATGATCATGAAATCGCAAAGGCGACAGGTCTGTCTTTGGAAAAAATTAGATCAGCTGGAAATTGTCTGAGAGTTGTTGCTTCGACCAATCAGAAGATGGGAGACTCTCTTAGTGTAAAGTATACGGAATTTATGCCTGATATGTCAATAGAGAATCCTGAAGAAGCTGTGATGAAGCAACACATGAGAAAGGACTTATATGATCTCTTGAAAGGCTTGGATTCAAGAGAAAGAGAAATATTAACCCTCCGTTTTGGTCTTAGAGATCATCATTCAAAGTCACTTGAAGAAATAGGGAGATATTTCAAAGTTAGCAAAGAATGTGTGAGGAAGATAGAAAGGAAAGCTCTAACAAAATTAAGGAACAAAGCAGCTACATCAAATTTCAATTTTTATTTATTGGATTTAGATTCTTAG 1386 0.3925 MLNNTQRQRHFEKEISTASLKFQSFRAIHYRLLMENLGTLEQTFADSEAIKLKSDIVLQLGKLGALELFNVCLSRSLELSSHAVELGEHQKENRKIDEKIDKVFVKSTRKKQHKRRTQKAFTAMEVRLQPSTSKADDKEYRLHSLPASVKKASNRKNTRIMVARREAEMSKGVKVLAELEKIREGIEESTNQVASLKSWAEAAGVHEKVLQQKLHYCQRCRDELIRSTRSLVVYLARKYRGMGIALEDLLQAGYIGVLQGAVRFDYTRGYRFSTYVQYWIRKSISRMVERYAREIVVPWSLSRAMNQIQKAQKSLKITSMKSPDDHEIAKATGLSLEKIRSAGNCLRVVASTNQKMGDSLSVKYTEFMPDMSIENPEEAVMKQHMRKDLYDLLKGLDSREREILTLRFGLRDHHSKSLEEIGRYFKVSKECVRKIERKALTKLRNKAATSNFNFYLLDLDS 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g03378 461 Pfam Sigma-70 region 3 305 379 IPR007624 GO:0003700|GO:0006352|GO:0006355
Aip07g03378 461 Pfam Sigma-70, region 4 392 445 IPR007630 GO:0003700|GO:0006352|GO:0006355
Aip07g03378 461 TIGRFAM sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 220 446 IPR014284 GO:0003700|GO:0006352|GO:0006355
Aip07g03378 461 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 7 456 - -
Aip07g03378 461 PANTHER RNA POLYMERASE SIGMA FACTOR SIGC 7 456 - -
Aip07g03378 461 CDD Sigma70_r4 386 444 - -
Aip07g03378 461 Pfam Sigma-70 region 2 224 292 IPR007627 GO:0003700|GO:0006352|GO:0006355
Aip07g03378 461 Gene3D RNA Polymerase Primary Sigma Factor 8 295 - -
Aip07g03378 461 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 356 453 IPR013324 -
Aip07g03378 461 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 297 367 IPR013324 -
Aip07g03378 461 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 163 293 IPR013325 GO:0003700|GO:0006352|GO:0006355
Aip07g03378 461 Gene3D - 374 456 IPR036388 -
Aip07g03378 461 Gene3D - 297 373 IPR036388 -
Aip07g03378 461 PRINTS Major sigma-70 factor signature 396 408 IPR000943 GO:0003700|GO:0006352|GO:0006355
Aip07g03378 461 PRINTS Major sigma-70 factor signature 248 261 IPR000943 GO:0003700|GO:0006352|GO:0006355
Aip07g03378 461 PRINTS Major sigma-70 factor signature 417 432 IPR000943 GO:0003700|GO:0006352|GO:0006355
Aip07g03378 461 PRINTS Major sigma-70 factor signature 272 280 IPR000943 GO:0003700|GO:0006352|GO:0006355
Aip07g03378 461 PRINTS Major sigma-70 factor signature 432 443 IPR000943 GO:0003700|GO:0006352|GO:0006355
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip07g03378 K03093 - gmx:100802522 548.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip07g03378 07 123462824 123466483 Aip07g03378 07 123462824 123466483 ECH