Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g03315 ATGCCCACTATGCCCACTAATGAAGACTTCCAAGGTGTTTCGAATTGCTATGTGTTCAAGAGCAGATTGCAGGAGTATGCACAGAAGGTGGGGCTTCCAACACCTGTGTATGAAACTATCAAGGAAGGGCCTTCTCATGAACCCTCCTTCAGGTCCACAGTGATAGTCAATGATGTCAGGTATGACTCTCTCGCCGGCTTCTTCAACCGCAAAGCGGCGGAGCAGTCAGCTGCTGAGGTTGCTTTGATGGAGCTGGCCAAGACTAATGAAGTTAACCAATCCATTAAACAACCTGTTCATGAAACTGGATTGTGCAAGAACTTACTTCAGGAGTATGCGCAGAAGATGAATTATGCAATGCCCATGTATCACAGCCAAAAGGATGAAACACCAAGTCGAGCACCCAGATTTACATGTACTGTTGACATTGGCGGTATTCTCTATATTGGGGGAGCGGCAAAAACAAAGAAAGAAGCAGAAATAAAAGCAGCTAGAACTGCTCTGCTAGCTATCCAATCAAGTGCATCTTCTTCCCAAAACCAGTTGGGTCATTCACAGTTGACAGTAATTCCATGCCGGAAACGGGCAGCAGAAACTGTTCCCCCTGTTGATGAGACTTCAAAACCCCCAAAGCCAAAGAAGCGATTTAGGAAGAAATCTTCAAAAAGGAAATTCTCTAAAGATAAGACTGGCCGTAATGCTGAAAATGCAGGCGCTGGAGCAAATATTAATCCTGGGGTAGAGTCACATGCAAATATCAGCAATGAGTCTGGCTTCAAGGAAACAAAATGTGATGGAGCATTCATTTCAGAAGCCATGAAGAGTTCTGAGAATGGGATATTGCTTAATTATTGCGAGAAAGAAGTATTGGTTAAGGAAGGTTCTCCGGTGATGAATGGCAATGGATCTGTTGAAATTGGGAACTCAACAAAATTGCTTTCCAAAGATCCAGAAGCTAGTGTGGAGATGAACAAGCAGCAAGATAATGGAGAAATCATAAACGAACTGTGA 1011 0.4362 MPTMPTNEDFQGVSNCYVFKSRLQEYAQKVGLPTPVYETIKEGPSHEPSFRSTVIVNDVRYDSLAGFFNRKAAEQSAAEVALMELAKTNEVNQSIKQPVHETGLCKNLLQEYAQKMNYAMPMYHSQKDETPSRAPRFTCTVDIGGILYIGGAAKTKKEAEIKAARTALLAIQSSASSSQNQLGHSQLTVIPCRKRAAETVPPVDETSKPPKPKKRFRKKSSKRKFSKDKTGRNAENAGAGANINPGVESHANISNESGFKETKCDGAFISEAMKSSENGILLNYCEKEVLVKEGSPVMNGNGSVEIGNSTKLLSKDPEASVEMNKQQDNGEIINEL 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g03315 336 SUPERFAMILY dsRNA-binding domain-like 17 94 - -
Aip07g03315 336 SMART DRBM_3 105 172 IPR014720 -
Aip07g03315 336 SMART DRBM_3 19 86 IPR014720 -
Aip07g03315 336 MobiDBLite consensus disorder prediction 198 254 - -
Aip07g03315 336 Gene3D - 19 100 - -
Aip07g03315 336 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 18 87 IPR014720 -
Aip07g03315 336 PANTHER DOUBLE-STRANDED RNA-BINDING PROTEIN 1 4 295 IPR031147 GO:0003725
Aip07g03315 336 CDD DSRM_AtDRB-like_rpt1 18 86 IPR044450 GO:0003725
Aip07g03315 336 Gene3D - 101 173 - -
Aip07g03315 336 MobiDBLite consensus disorder prediction 212 226 - -
Aip07g03315 336 PANTHER RIBONUCLEASE III 4 295 IPR011907 GO:0003723|GO:0004525|GO:0006364
Aip07g03315 336 MobiDBLite consensus disorder prediction 315 336 - -
Aip07g03315 336 Pfam Double-stranded RNA binding motif 106 169 IPR014720 -
Aip07g03315 336 Pfam Double-stranded RNA binding motif 20 84 IPR014720 -
Aip07g03315 336 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 104 173 IPR014720 -
Aip07g03315 336 SUPERFAMILY dsRNA-binding domain-like 106 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip07g03315 Aip-Chr7 122326089 122330116 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip07g03315 - - gmx:100782651 410.994
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip07g03315 07 122326089 122330116 Aip07g03315 07 122326089 122330116 ECH