Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g03159 ATGGCTTCTTTTCTGTGTAACCAATCTATATTAGTTTCGTGTCCATGTTCTTCTTCCTTCTCTTCAAATCCCTTTCCTAAATCTAAAACCCTATCTTACTCTCCCCACCTTCCTCGCTCTAACAACTTAACTAGAACCACCAATCCTTCCCTTCTTCATCGAAGTCGAAGGCCCCTCTTCAAATCTTATCTCGCTTCGCCAGATTCCTTTCCAACTATAAATAATGAAACGGAGGACAGTCCGAATGATAGAAGAGTGACAGAAGATGATGGAGATATACAATCTTTACCGAGTTTAGCAGCCCTCATTGAGGCATACAAGGAAGCCATTCTCAATAGAGATGAAAAAGCTATATCTTGGATTGAAGTGAGAATAAAGTTGATTGAAACTAAAAAAACTGAACTGATTAAAGAATTGTCAACTCTATCAGCAGAAAAAGTTGCTTCTAAGGAGAAATGTCTACGGCTACAAGCAGATTTTGACAATTTTAGGAAAAAATATGAGAAAGAAAAACTAGTTATCCAGAATGATGCCCAAGAAGAAGTCATTGAAAAACTTCTGTTGATGGTGGACAATTTTGAGAGAACCAAACAACAAAATATAGCGGAAACAGAGAAAGAGAAAAAGATCGATGCAAGCTATCAAGGTATTTACAAGCAATTTGTAGAAGTTATGAGGAGCCAAAATGTTTCTGTGGTACCAACAGTTGGTAAACCATTTAATCCATTGCTACATGAAGCTGTTGCACGCGAGGAGTCCCAAGAGTTCAAGGAAGGGATTATAATTAAAGAAACCCGGCGCGGTTTCTTTCTTGGAGACCGGGTTCTAAGACCAGCACTTGTCAAGGTTTCCTCAGGGCCTGGAAATAAAAAATCTATGGTAGCTTCTGACAAATCCTTGGAGCAGCCTTCAGCAGCTGCTGGAGTAGATGAAAGATAG 939 0.393 MASFLCNQSILVSCPCSSSFSSNPFPKSKTLSYSPHLPRSNNLTRTTNPSLLHRSRRPLFKSYLASPDSFPTINNETEDSPNDRRVTEDDGDIQSLPSLAALIEAYKEAILNRDEKAISWIEVRIKLIETKKTELIKELSTLSAEKVASKEKCLRLQADFDNFRKKYEKEKLVIQNDAQEEVIEKLLLMVDNFERTKQQNIAETEKEKKIDASYQGIYKQFVEVMRSQNVSVVPTVGKPFNPLLHEAVAREESQEFKEGIIIKETRRGFFLGDRVLRPALVKVSSGPGNKKSMVASDKSLEQPSAAAGVDER 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g03159 312 Gene3D Head domain of nucleotide exchange factor GrpE 230 284 IPR009012 GO:0006457
Aip07g03159 312 PRINTS GrpE protein signature 154 170 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Aip07g03159 312 PRINTS GrpE protein signature 182 197 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Aip07g03159 312 PRINTS GrpE protein signature 237 252 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Aip07g03159 312 PRINTS GrpE protein signature 264 283 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Aip07g03159 312 Pfam GrpE 129 284 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Aip07g03159 312 SUPERFAMILY Head domain of nucleotide exchange factor GrpE 231 286 IPR009012 GO:0006457
Aip07g03159 312 SUPERFAMILY Coiled-coil domain of nucleotide exchange factor GrpE 134 226 IPR013805 -
Aip07g03159 312 Coils Coil 176 196 - -
Aip07g03159 312 MobiDBLite consensus disorder prediction 64 91 - -
Aip07g03159 312 Gene3D - 121 226 IPR013805 -
Aip07g03159 312 PANTHER GRPE PROTEIN HOMOLOG 2 302 - -
Aip07g03159 312 PANTHER GRPE PROTEIN 2 302 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Aip07g03159 312 ProSitePatterns grpE protein signature. 240 283 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Aip07g03159 312 MobiDBLite consensus disorder prediction 284 312 - -
Aip07g03159 312 Hamap Protein GrpE [grpE]. 74 285 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Aip07g03159 312 CDD GrpE 150 283 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Aip07g03159 312 Coils Coil 125 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip07g03159 Aip-Chr7 119492375 119495213 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip07g03159 K03687 - gmx:100809893 341.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip07g03159 07 119492375 119495213 Aip07g03159 07 119492375 119495213 ECH