Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g03129 ATGATCTCTGTCTATGCAAAGTGTCTCCATGTAGATGATGCGCGAAACCTGTTTGACGAAATGCCTCACAGAAATATCGTTACTTGGACCACAATGCTCTCTGCATACACCAATTCTGGGAGTCCCCACGTGGCCCTTTCGCTTTACAATCAGATGCTGCAATCCGAAACAGAGGAACCCAATGGGTTCTTGTACTCGGCGGTTCTCAAGGCCTGTGGTCTAGTGGGTGATGTTGAACTGGGTAGGTTTGTTCACCAGCATGTAGCTCAGGCGAAAATGGAATTTGACACTGTTCTGATGAATGCACTTTTGGACATGTACGTCAAATGTGGGAGCTTGAAGGATGCAAAGCGAGTTTTTTATGAGACCCCACTTAAGAATTCGACTTCATGGAACACGCTCATTCTGGGTCATGCTAAAAGTGGCTTGGTGGGCGATGCTCTGAAGCTGTTTGATCAAATGCCGGAACGTGATCTTGTTTCTTGGAATAGCATCGTTGCTGGTCTAGCAAGTACTGGAAGCCCCCATGCATTGCAGTTTGTTGCTAGGATGCACGTGCAAGGCTTTAAACTAGATGAGTTCACATTCCCACGCGCTCTCAAAATTTGCGGTCAGGTTGGTGAAATAGCAACGGGGAAACAAATTCATTGTTATGTTATCAAGTCAGGGTTTGAGTCTTGCAATTACTGTATATCATCGTTGATTGATATGTATTCGAATTGCAAGTTATTGGATGAAGCAATGTTGATCTTTGATCAGTTCTTCGACAATTCTTTTGTTGTCGAAAGCTTGGCACTTTGGAATTGTATGCTTTCTGGATATGTTGTCAATGGGAATTATGGAAAGGCTCTTAGTCTGATTGCACATATCCATAAAACTGGTGCATATTTCGATTCCTATACCTTTAGTATTGCTTTAAAGGTTTGTATGTACTTCCAGAACTTGAGGTTGGCATCTCAGGTGCATGGTTTGGTCATCACAAGTGGCTATGAGTTAGATTGCGTTATTGGAAGCATTCTTATTGATCTCTATGCGAACCAGGGGAATATTAATATTGCTTTGAGATTGTTTGAAAAGTTGCCAGATAAAGATGTTGTGGCTTGGTCTAGTGTGATTGCTGCTTGTGCTAGATCTGGCTTAGATTCATTGGCTCTATCCCTCTTTACGAATATGACTCGTATGGATCTTGAGATTGACCATTTTATCCTTACAGTTGTTCTTAAAGTTTGTTCAACCTTGGCATCTCAGAGAATTGGAAAGCAAATTCATGCTAACTGTCTTAAAAAGGGATATGAATCAGAGGGAGTTATTGCAACTGCTCTTATTGATATGTACTCAAAATGTGGTGACATTGAGGATGCCTTAGCGTTGTTTGGCTGTCTTTCAGAAAGAGACACTATGTGTTGGACAGGGATTATTGTTGGATGTGCACAAAACGGAAGAGTAGACGAGGCAATCAATCTTTTGCATAAGATGATAGAATCTGGTGAAAAGCCAAATGAAATCACCATTCTAGGTGCTCTTACGGCTTGTAGGCATGCTGGCCTAGTTGAAGAGGCATGGGCCATATTTAATTCTGTTGAAACAGACCATGGATTGAAAAGGTGCCTAGAGCATTACAGTTGTATGGTTGATCTACTTGGTCAAGCAGGACGCTTCGAAGAAGCACTAAAATTGATTAGTGACATGCCATTTAAGCCTGACAAGACGATATGGTTCTCCTTGCTTGGCGCTTGTGGAACTCACAAGAACCAGTATCTTGCTAATGTTGTTGCTGAGCATCTTCGTGCTACATTTCCAGAGGATGCTTCTGTATATGTAATGCTGTCAAACGTTTATGCAACTCTTGGAATGTGGGATAGTTTAAGCGAAGCAAGGGAAGCCTTGAAAAAAGTAGGCTTAAAAGGAGCTGGAAAAAGCTGGATTGAGATCTCAAGTTGA 1941 0.4189 MISVYAKCLHVDDARNLFDEMPHRNIVTWTTMLSAYTNSGSPHVALSLYNQMLQSETEEPNGFLYSAVLKACGLVGDVELGRFVHQHVAQAKMEFDTVLMNALLDMYVKCGSLKDAKRVFYETPLKNSTSWNTLILGHAKSGLVGDALKLFDQMPERDLVSWNSIVAGLASTGSPHALQFVARMHVQGFKLDEFTFPRALKICGQVGEIATGKQIHCYVIKSGFESCNYCISSLIDMYSNCKLLDEAMLIFDQFFDNSFVVESLALWNCMLSGYVVNGNYGKALSLIAHIHKTGAYFDSYTFSIALKVCMYFQNLRLASQVHGLVITSGYELDCVIGSILIDLYANQGNINIALRLFEKLPDKDVVAWSSVIAACARSGLDSLALSLFTNMTRMDLEIDHFILTVVLKVCSTLASQRIGKQIHANCLKKGYESEGVIATALIDMYSKCGDIEDALALFGCLSERDTMCWTGIIVGCAQNGRVDEAINLLHKMIESGEKPNEITILGALTACRHAGLVEEAWAIFNSVETDHGLKRCLEHYSCMVDLLGQAGRFEEALKLISDMPFKPDKTIWFSLLGACGTHKNQYLANVVAEHLRATFPEDASVYVMLSNVYATLGMWDSLSEAREALKKVGLKGAGKSWIEISS 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g03129 646 Gene3D Tetratricopeptide repeat domain 437 646 IPR011990 GO:0005515
Aip07g03129 646 Gene3D Tetratricopeptide repeat domain 314 419 IPR011990 GO:0005515
Aip07g03129 646 Gene3D Tetratricopeptide repeat domain 198 313 IPR011990 GO:0005515
Aip07g03129 646 Gene3D Tetratricopeptide repeat domain 1 77 IPR011990 GO:0005515
Aip07g03129 646 TIGRFAM PPR: pentatricopeptide repeat domain 27 55 IPR002885 -
Aip07g03129 646 TIGRFAM PPR: pentatricopeptide repeat domain 468 501 IPR002885 -
Aip07g03129 646 TIGRFAM PPR: pentatricopeptide repeat domain 266 294 IPR002885 -
Aip07g03129 646 TIGRFAM PPR: pentatricopeptide repeat domain 540 563 IPR002885 -
Aip07g03129 646 TIGRFAM PPR: pentatricopeptide repeat domain 130 160 IPR002885 -
Aip07g03129 646 Gene3D Tetratricopeptide repeat domain 81 157 IPR011990 GO:0005515
Aip07g03129 646 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 465 499 IPR002885 -
Aip07g03129 646 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 43 641 - -
Aip07g03129 646 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 127 161 IPR002885 -
Aip07g03129 646 SUPERFAMILY TPR-like 424 619 IPR011990 GO:0005515
Aip07g03129 646 Pfam PPR repeat 338 364 IPR002885 -
Aip07g03129 646 Pfam PPR repeat 232 253 IPR002885 -
Aip07g03129 646 Pfam PPR repeat 366 394 IPR002885 -
Aip07g03129 646 Pfam PPR repeat 267 287 IPR002885 -
Aip07g03129 646 Pfam PPR repeat 99 122 IPR002885 -
Aip07g03129 646 Pfam PPR repeat 130 158 IPR002885 -
Aip07g03129 646 Pfam PPR repeat 539 563 IPR002885 -
Aip07g03129 646 Pfam PPR repeat 439 463 IPR002885 -
Aip07g03129 646 Pfam PPR repeat 468 496 IPR002885 -
Aip07g03129 646 Pfam PPR repeat family 24 72 IPR002885 -
Aip07g03129 646 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 25 59 IPR002885 -
Aip07g03129 646 Pfam E motif 582 643 IPR046848 -
Aip07g03129 646 PANTHER BNAC03G28070D PROTEIN 43 641 - -
Aip07g03129 646 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 364 398 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip07g03129 Aip-Chr7 119031660 119033600 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip07g03129 1 644 Glycoside Hydrolase AT3G49170 30.992 1.39e-106 340
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip07g03129 - - gmx:100780678 981.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip07g03129 07 119031660 119033600 Aip07g03129 07 119031660 119033600 ECH