Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g03043 ATGGAAGTGCCGGAGTGTCCGGTGTGCCTCGAACGCTACGACGACCAAGTTTCCATCCCTAGGGTCCTATCTTGCGGTCACTCCGTCTGCGAAGCATGCCTCGTGGAGCTTCCGCTGCGGTTCCCGAACACGATTCGGTGCCCGGCGTGTACACAGCTCGTTAAGTACTCTTCAGAGCAAGGACCTTCGTCTCTTCCAAAGAACATCGACCTTCTCAGGCTTTGCCTCTCTTCATCTTCTTCTTCTTCTTCTTCGCGATCGGTGAAACCGACTCAACGGTCAACGATCGACGGTTGTGATGATCGGTCTGTAATTCGAGATCGGTTCTGGTCCGACGAGTTCTATGCCAAGTGGAAGGACTGGATTCTCCCGCACGACGCAGTTTCGGTGGAGTCCCCACCTGAACCCGAATCCGAACCCAGCGGGTTTGTGTTGCGAGGGCAATTTGGTTCGAGTTCTTCGTTGAAGGGTAGGGTTAGTGTTTGTTCTCGAAATAGCAAGTGTTTGAGCCTTGTTCCTGTTTTTTCTTTACCTCGTGTTTTGAATTGTTCGAAGTTTAAGTTCAGTTATGTTGCGAGGATTATGGAATGTTTGGTGGGGATGAAGGAGGCTGTGAGGGAGGAGTTAGCTTTGATTCTAGAAGCTTCTGTGAGGCAGGGCAGGGTTTTTAGGGTTTATGGGCTGTGGAGTGAAGTGGAGGTATTGGATGGGTCATTGTACCTGGTGTGTGAAAGGCACAATGGTGGTAGCATTTTGCAGAAGTTTGGTGAATTGAAGAATGGGTTCCTTGGTTTGGGATTGGAAGATAAAAAAGATGGGATTTTAAGCTTTGCTGTGATTGGGAAGAGTGTGTGTGATTCTGTGCTGGCTTTGCATTTGGAAGGTTTGGTTGCTGGTTGTTTAGGACCTTCGTGCTTTGCTTTCGATGAGCTTGGTGGTGTTTGTGTTAATTTGAATGAGGTTTTGGTTATGAGAAGGAAGACTGTGTATAGTTTTTCTGGTGGCAACAAGGTTAGGCAGAAAGAAGAGGGATTGTTTAAGGGTTGTTTAAAAAATGAGCTTTTTTTATGCCCTGAGGTTTTGTTTCGATTACTGCAGAAGAATGCTGCTGTTAATCCGGAGGATGAGCATTCCAGATATCCGTTCGGGTATGGCTCAGATGTGTGGTCATTGGCTTGTGTGCTGTTGTGGCTTCTCATTGGAGATGCACTCCCTCAGATTCCCTTTGAAATGAGTGAAGAGAATGGCTTTGACTTATCAGCTAGTTATGTTTGTTGGGCGGAGAAAGTTAGTTCTGTTTTGGAAGACAAACTTGGCTCTGAATATCCGTCATTGAGGGGGACACTTTGCAAATGTTTGGACATGAATCCGGGAAACCGCATGAGTGTGGTGGATGTGCGGAAGTGCATTCAGGATATGTTACTCAAACCTGAATTCGATTTTCTGGAAAACTTGGAGGTTACGGTTAATCGGAGCAGCACTGGTTGCTGCTTGGTTTTTGGTGAGTTCAGTCAAGGACAATGTGAGTTGAATGAAAAAGAAGACAATGGGCCACCAGATGTTGTTGATGGGGAAGAGAAACCTGATGCAGATTTGGTTGCTAGCTTATCTAAGGGAATGACTGAACTTAAAGATCTGCGAGGACATCTGGATTGTATCTCTGGACTAGCAATTGGCGGGGGATATCTGTTTAGCTCTTCGTTTGATAAAACTGTCAAAGTATGGTCGTTGCTGGACTTTTCTCTTTCACACACGTTTAAAGGTCATGAGGATAAAGTCATGGCTATAGTTTATGTAGATGATAAAGAACCATTGTGTGTAAGTGGTGATAATGGAGGGGGCATATTTGTCTGGGGGCTTTCTGCTCCTCTCAGGCAAGACCCCTTAAGGAAATGGTATGAGCAGAAGGATTGGCGCTTCAGTGGTATCCATTCCTTAACTGTTTCAGCAAGTCGTTGTCTCTACACTGGAAGTGGAGATAGAACAATAAAAGGTTGGTTGTTAAAGGATGGAACTTTGATGTGCACAATGACTGGTCATAGGTCTGTAGTTTCCACTCTTGTAGTGTGTGATGAGGTTCTTTACAGTGGTAGTTGGGATGGAACCGTTCGGTTGTGGAATCTTAGCGATCACAGCCCATTGACAGTGCTAGGGGAAGGTATGCCTGGAGAAATGAAGTCTATCCTAGCTATTACTGTTGATAGACATTTGCTTGTTGCGGCGTATGAGAACGGCTGCATAAAGGTATGGAGAAATGATGTGTTCATGAGTTCCAAATCATTACATAATGGTGCCATTTTTGCTATGAGCATGCAAGGGCAATGCCTTTATACAGGAGGCTGGGACAAAAATATAAATATACAGGAATTAGCTGGAGACGACGAATTGGATGTCAGAGCATTTGGAACCATTTCTTGCAGTTCTGTTGTAACGGCTATTTTAAGCTGTCAAGGAAAACTTTTTGTTGGATATGCTGACAAGTCTATCAAGGGGACGCTAGGTAGTATTAGAAAGAGTCTCAACGATTTCATGAGCTTGAACTACTGGGTTGTTCGTGATTACTACCGCCTTGTTAGCTCTGTTAACTCCTTCGAGCCCCACATTCAGAAACTCTCCGACGAACAGTTAACGGCCAAGACGGAGGAGTTTCGCAGGAGGCTCGGACGTGGCGAGACCCTTGGAGATATTCAAGCTGAGGCGTTTGCTGTTGTTCGTGAAGCTGCAAGGAGGAAGCTTGGGATGCGCCATTTTGATATTATTGGTGGGGCAGTGCTGCATGATGGGTCAATTGCCGAGATGAAAACAGGGGAGGGGAAAACGTTGGTTTCCACGTTAGCAGCGTATCTTAATGCCCTCACTGGTGAGGGTGTTCATGTGGTAACCGTCAATGATTATTTAGCTCAGCGTGATTCTGAATGGATGGGGCGTGTTCATTGCTTCTTAGGTCTTTCTGTAGGCCTTATTCAGAAGGGGATGAATGCTGCAGAGCGGAGATCCAACTATAGATGTGATATAACATATACCAATAACTCTGAACTTGGCTTTGATTATTTACGAGATAATCTTGCTGGAAATAGGGAAGACCTTGTGATGAGATGGCCAAAGCCATTTCATTTTGCAATTGTTGATGAAGTGGATTCTGTCCTGATAGATGAAGGAAGAAATCCTTTGTTAATCAGCGGTGAGGCTAGTAAAGATGCTGCACGATATCCTGTTGCTGCAAAAGTAGCTGAACTGCTTGTGCAGGGCACTCATTATAACGTGGAGCTTAAAAATCAGTCAGTGGAGTTGACTGAGGAAGGAATTGCTCTTGCTGAAATGGCTCTTGAAACCAATGACCTTTGGGATGAAAATGATCCCTGGGCTAGGTTTGTGATGAACGCTTTAAAAGCTAAAGAGTTCTATCGCCGAGATGTGGAGTACATAGTCCGAGATGGGAAGGCTTTAATTATCAATGAGCTGACAGGAAGAGTTGAAGAGAAACGGAGATGGTCTGAGGGGATTCACCAGGCTGTGGAGGCAAAGGAAGGTTTGAAGATTCAGGCAGATTCCGTTGTTGTGGCACAAATCACTTACCAGTCATTATTCAAGCTCTATCCAAAATTGTCAGGAATGACTGGGACTGCAAAAACAGAAGAGAGAGAATTCATAAAAATGTTCCAGATGCCAGTCATTGAAGTGCCCACAAATCTTCCTAATATTCGTAAAGATCTTCCTATTCAAGCTTTCGCCACTGCTCGTGGGAAATGGGAGCAAGTTCGCCGAGAAGTTGAATATATGTTTAGACAAGGCCGTCCTATCTTAGTTGGGACAACTAGTGTAGAAAATTCTGAACTTTTGGCTGGTCTGCTTTGGGAGTGGAATATTCCCCACAATGTCCTGAATGCTCGACCCAAGTATGCTGCAAGAGAAGCTGAAATTGTTGCACAGGCAGGACGCAAACATGCCATTACCATCTCTACAAATATGGCAGGCAGGGGCACAGATATAATCCTTGGAGGAAATCCAAAAATTCTTGCCAGAGAAATTATAGAGGATAGCATAATTCATTTATTGACACAACAGGATCCAAATGTTGAACTTGCTAGTGAGACGGTTTCGCAACAGGTAGTATTTTATATTTGCAACATGAATTATTCAGCCAAATATGTCTCGAAAAGTGAGGGTAGAAACTGGACATATCAGAAGGCTAAATCCTTTATCACAGAGGCTATTGAATTTAGTCTGTCATATAGTTTTAAGGAGCTGGAGGAGCTTGCTAATGAAGATTCTGAATTTTACCCTCTTGGTCCAACAGTAGCACTTGCCTATGTGTCAGTTCTGAAGGATTGTGAAGAGCACTGTTTGCATGAAGGCTCTGAAGTTAAAAGGCTTGGTGGCCTTCATGTAATTGGTACATCTTTACACGAGTCCCGGAGAATAGATAACCAGCTCCGTGGCAGAGCAGGAAGGCAGGGAGATCCAGGTTCAACACGATTTATGGTTAGCTTGCAGGACGAGATGTTTCAAAAGTTCAATTTTGATACGGAATGGGCTGTCAGACTTATATCAAAGATTACAAATGATGAGGATATGCCAATTGAGGGTGATGCCATTGTGAAGCAGCTCTTGGGGTTGCAAATCAATGCAGAGAAGTTCTTCTTCAGCATAAGAAAGAGCCTAGTTGAATTTGATGAAGTATTGGAGGTACAGCGAAAGCATGTTTATGATCTAAGGCAGTTGATCTTGACTGGAGATGATGAAAGCTGTTCCCAACACATATTCCAGTACCTGCAAGCAGTTGTGGATGAGATTGTCTTCAGTAACATCAATCCAATGAAGCATCCATGTACCTGGAGTTTGAGTAAGCTCTTGAAAGAGTTTATGACAATTGGTGGAAAGCTGCTTCATGAATCTTTTGGAGGGATCACCGACGACTCTTTGTTAAACTCACTTGGGCAACTGAATGATGCGGGTTCCATTGATATTGTCAACTTTTCCCTTCCAAATCTGCCCACACCTCCAAATGCATTCAGGGGAATCCGCAGGAAAAGTTCTTCGTTGAGACGTTGGCTTGTTATTTGCTCTGATGATCTAATTGAGAACGGGAAGTATCGGACAACATCTAATCTCCTCCGGAAATATCTTGGAGATTTTCTAATTGCTTCATATCTAAATGTTGTTGAAGAGTCTGGTTATGAAGATAAATATGTCAAGGAAATTGAGAGAGCTGTTCTTTTGAAAACTCTTGATTGCTTCTGGAGAGATCACCTTGTAAACATGAATCGGCTCAGCTCTGCGGTGAATATAAGGAGCTTTGGGCACAGAAACCCTCTTGAAGAGTACAAAATTGACGGTTGCCGTTTTTTCATCTCAATGCTTAGTGCAACAAGGAGAACTCTGGCCACTCCTTCTCCGGTAGCGTTATCCGTATTTCTGGTTTGTCAAAGGGACTGGGATGTGACATGGAGATGCACCATACAGGGTAATCACAGAGCGGATCCTATTTCTTACAGTTCTTGTGCTTGA 5508 0.4405 MEVPECPVCLERYDDQVSIPRVLSCGHSVCEACLVELPLRFPNTIRCPACTQLVKYSSEQGPSSLPKNIDLLRLCLSSSSSSSSSRSVKPTQRSTIDGCDDRSVIRDRFWSDEFYAKWKDWILPHDAVSVESPPEPESEPSGFVLRGQFGSSSSLKGRVSVCSRNSKCLSLVPVFSLPRVLNCSKFKFSYVARIMECLVGMKEAVREELALILEASVRQGRVFRVYGLWSEVEVLDGSLYLVCERHNGGSILQKFGELKNGFLGLGLEDKKDGILSFAVIGKSVCDSVLALHLEGLVAGCLGPSCFAFDELGGVCVNLNEVLVMRRKTVYSFSGGNKVRQKEEGLFKGCLKNELFLCPEVLFRLLQKNAAVNPEDEHSRYPFGYGSDVWSLACVLLWLLIGDALPQIPFEMSEENGFDLSASYVCWAEKVSSVLEDKLGSEYPSLRGTLCKCLDMNPGNRMSVVDVRKCIQDMLLKPEFDFLENLEVTVNRSSTGCCLVFGEFSQGQCELNEKEDNGPPDVVDGEEKPDADLVASLSKGMTELKDLRGHLDCISGLAIGGGYLFSSSFDKTVKVWSLLDFSLSHTFKGHEDKVMAIVYVDDKEPLCVSGDNGGGIFVWGLSAPLRQDPLRKWYEQKDWRFSGIHSLTVSASRCLYTGSGDRTIKGWLLKDGTLMCTMTGHRSVVSTLVVCDEVLYSGSWDGTVRLWNLSDHSPLTVLGEGMPGEMKSILAITVDRHLLVAAYENGCIKVWRNDVFMSSKSLHNGAIFAMSMQGQCLYTGGWDKNINIQELAGDDELDVRAFGTISCSSVVTAILSCQGKLFVGYADKSIKGTLGSIRKSLNDFMSLNYWVVRDYYRLVSSVNSFEPHIQKLSDEQLTAKTEEFRRRLGRGETLGDIQAEAFAVVREAARRKLGMRHFDIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDSEWMGRVHCFLGLSVGLIQKGMNAAERRSNYRCDITYTNNSELGFDYLRDNLAGNREDLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDAARYPVAAKVAELLVQGTHYNVELKNQSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVEYIVRDGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEREFIKMFQMPVIEVPTNLPNIRKDLPIQAFATARGKWEQVRREVEYMFRQGRPILVGTTSVENSELLAGLLWEWNIPHNVLNARPKYAAREAEIVAQAGRKHAITISTNMAGRGTDIILGGNPKILAREIIEDSIIHLLTQQDPNVELASETVSQQVVFYICNMNYSAKYVSKSEGRNWTYQKAKSFITEAIEFSLSYSFKELEELANEDSEFYPLGPTVALAYVSVLKDCEEHCLHEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFNFDTEWAVRLISKITNDEDMPIEGDAIVKQLLGLQINAEKFFFSIRKSLVEFDEVLEVQRKHVYDLRQLILTGDDESCSQHIFQYLQAVVDEIVFSNINPMKHPCTWSLSKLLKEFMTIGGKLLHESFGGITDDSLLNSLGQLNDAGSIDIVNFSLPNLPTPPNAFRGIRRKSSSLRRWLVICSDDLIENGKYRTTSNLLRKYLGDFLIASYLNVVEESGYEDKYVKEIERAVLLKTLDCFWRDHLVNMNRLSSAVNIRSFGHRNPLEEYKIDGCRFFISMLSATRRTLATPSPVALSVFLVCQRDWDVTWRCTIQGNHRADPISYSSCA 1835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g03043 1835 SMART SecA_DEAD_2 840 1217 IPR011115 GO:0005524|GO:0016020|GO:0017038
Aip07g03043 1835 ProSiteProfiles Protein kinase domain profile. 138 474 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip07g03043 1835 ProSiteProfiles Trp-Asp (WD) repeats profile. 546 585 IPR001680 GO:0005515
Aip07g03043 1835 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 677 709 - -
Aip07g03043 1835 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 920 1083 IPR014001 -
Aip07g03043 1835 PRINTS SecA protein signature 948 958 IPR000185 GO:0005524|GO:0006605|GO:0006886
Aip07g03043 1835 PRINTS SecA protein signature 1154 1176 IPR000185 GO:0005524|GO:0006605|GO:0006886
Aip07g03043 1835 PRINTS SecA protein signature 1228 1241 IPR000185 GO:0005524|GO:0006605|GO:0006886
Aip07g03043 1835 PRINTS SecA protein signature 1001 1021 IPR000185 GO:0005524|GO:0006605|GO:0006886
Aip07g03043 1835 PRINTS SecA protein signature 896 920 IPR000185 GO:0005524|GO:0006605|GO:0006886
Aip07g03043 1835 PRINTS SecA protein signature 1191 1208 IPR000185 GO:0005524|GO:0006605|GO:0006886
Aip07g03043 1835 Pfam zinc-RING finger domain 5 52 IPR001841 -
Aip07g03043 1835 Pfam SecA preprotein cross-linking domain 1069 1173 IPR011130 GO:0016020|GO:0017038
Aip07g03043 1835 ProSitePatterns SecA family signature. 1317 1332 IPR020937 GO:0006605|GO:0006886|GO:0016020
Aip07g03043 1835 SUPERFAMILY Pre-protein crosslinking domain of SecA 1061 1182 IPR036670 GO:0016020|GO:0017038
Aip07g03043 1835 ProSitePatterns Trp-Asp (WD) repeats signature. 694 708 IPR019775 -
Aip07g03043 1835 Gene3D - 1063 1183 - -
Aip07g03043 1835 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1232 1509 IPR027417 -
Aip07g03043 1835 Gene3D - 627 839 IPR015943 GO:0005515
Aip07g03043 1835 PANTHER SECA INNER MEMBRANE COMPONENT OF SEC PROTEIN SECRETION SYSTEM 834 1793 IPR000185 GO:0005524|GO:0006605|GO:0006886
Aip07g03043 1835 ProSiteProfiles Trp-Asp (WD) repeats profile. 677 716 IPR001680 GO:0005515
Aip07g03043 1835 SUPERFAMILY WD40 repeat-like 540 830 IPR036322 GO:0005515
Aip07g03043 1835 Pfam WD domain, G-beta repeat 673 707 IPR001680 GO:0005515
Aip07g03043 1835 Pfam WD domain, G-beta repeat 542 576 IPR001680 GO:0005515
Aip07g03043 1835 Gene3D - 1232 1528 IPR027417 -
Aip07g03043 1835 CDD SF2_C_secA 1235 1496 IPR044722 -
Aip07g03043 1835 Gene3D Helical scaffold and wing domains of SecA 1671 1797 - -
Aip07g03043 1835 Gene3D - 855 1230 IPR027417 -
Aip07g03043 1835 Hamap Protein translocase subunit SecA [secA]. 835 1804 IPR000185 GO:0005524|GO:0006605|GO:0006886
Aip07g03043 1835 PANTHER PROTEIN TRANSLOCASE SUBUNIT SECA2, CHLOROPLASTIC 834 1793 - -
Aip07g03043 1835 TIGRFAM secA: preprotein translocase, SecA subunit 861 1621 IPR000185 GO:0005524|GO:0006605|GO:0006886
Aip07g03043 1835 CDD DEXDc_SecA 875 1229 - -
Aip07g03043 1835 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 844 1230 IPR027417 -
Aip07g03043 1835 ProSiteProfiles SecA family profile. 836 1528 IPR014018 -
Aip07g03043 1835 SUPERFAMILY Helical scaffold and wing domains of SecA 1532 1629 IPR036266 -
Aip07g03043 1835 Pfam SecA Wing and Scaffold domain 1526 1794 IPR011116 GO:0016020|GO:0017038
Aip07g03043 1835 ProSitePatterns Zinc finger RING-type signature. 25 34 IPR017907 -
Aip07g03043 1835 Gene3D - 520 626 IPR015943 GO:0005515
Aip07g03043 1835 SUPERFAMILY Protein kinase-like (PK-like) 218 478 IPR011009 -
Aip07g03043 1835 SUPERFAMILY RING/U-box 5 58 - -
Aip07g03043 1835 SMART SecA_PP_bind_2 1062 1173 IPR011130 GO:0016020|GO:0017038
Aip07g03043 1835 Gene3D Helical scaffold and wing domains of SecA 1531 1635 - -
Aip07g03043 1835 SMART serkin_6 143 474 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip07g03043 1835 ProSiteProfiles Zinc finger RING-type profile. 6 51 IPR001841 -
Aip07g03043 1835 SUPERFAMILY Helical scaffold and wing domains of SecA 1699 1793 IPR036266 -
Aip07g03043 1835 SMART WD40_4 539 576 IPR001680 GO:0005515
Aip07g03043 1835 SMART WD40_4 710 751 IPR001680 GO:0005515
Aip07g03043 1835 SMART WD40_4 579 619 IPR001680 GO:0005515
Aip07g03043 1835 SMART WD40_4 625 667 IPR001680 GO:0005515
Aip07g03043 1835 SMART WD40_4 670 707 IPR001680 GO:0005515
Aip07g03043 1835 SMART WD40_4 752 789 IPR001680 GO:0005515
Aip07g03043 1835 CDD RING-HC_TRIM32_C-VII 5 51 - -
Aip07g03043 1835 Pfam SecA DEAD-like domain 851 1216 IPR011115 GO:0005524|GO:0016020|GO:0017038
Aip07g03043 1835 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 86 IPR013083 -
Aip07g03043 1835 Gene3D Transferase(Phosphotransferase) domain 1 201 474 - -
Aip07g03043 1835 SMART ring_2 6 50 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip07g03043 Aip-Chr7 117443726 117461562 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip07g03043 541 767 Acyl Lipid Metabolism Gene Families AT3G18860 29.218 8.76e-12 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip07g03043 K03070 - gmx:100793437 2770.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip07g03043 07 117443726 117461562 Aip07g03043 07 117443726 117461562 ECH