Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g02945 ATGAGTCACAGAGGAATGGACGACGATGATGAGGAGGAGTACGAGGAGGACGAGCAGGTAGCCGACTTCGATGAGGAGGCAGAGGAGGAAGAGGACGATAGGGGGCGCGGCAGCGGCGGCAGGAAACGTCGGAGATCTGATTTCATCGATGATGATGCTGAGGAGGTGGATGAGGATGAGGAGGAGGAGGACGATGACGATGATTATGGGGGTGGTGGCGGCCGCAGGCGCCAGAATAGGAAAGCCTCTGCTTCTCATTTCTTCGATGACATAGCGGAGGTGGATTCAGATGGGGAAGAAGAAGAAGAGGAAGGGGAGGACGATTTCTTTGTTGATAATGGAAATGATATTCCTGAGGACAATGTCGGTAGGAGCAGACTTCATAGGCCTTTGCATGAGCAAGATGAAGATTTTGAAGCTTTAGAAAGACACATCCAGGAAAGATATGCAAGGCGTGTGGAATCTTTTGATGAAGAGGCTACAGATGTAGAACAGCAAGCTCTTTTGCCATCTGTTAGAGATCCAAAGCTGTGGATGGTGAAATGCATGATTGGTCGTGAGCGAGAGACAGCTGTTTGCCTTATGCAAAAGTATATAGATAAGGGGGCTGAATTGCAAATCAGGTCAGCTATTGCCCTTGATCATCTTAAAAACTATATTTATGTGGAAGCAGATAAAGAGGCCCACGTGAGAGAGGCTATTAAGGGTTTAAGGAACATATATGGGGTGTCAAAAATAACACTAGTTCCAATAAGAGAAATGACGGATGTGCTGTCAGTTGAAAGCAAAGCAATTGATCTTGCCAGAGATACTTGGGTCAGAATGAAGATTGGCACATATAAAGGGGACCTTGCCAAGGTAGTTGATGTTGATAATGTGAGGCAGAGGGTTACGGTGAAACTGATTCCAAGGATAGACTTGCAGGCGCTTGCAAATAAACTGGAAGGTAGAGAAGTTGTGAAAAAGAAGGCGTTTGTCCCTCCTCCTCGTTTTTTGAATGTTGATGAAGCTAGGGAACTGCATATTCGTGTCGAGCATAGACGTGATGCCTATGGGGAAAGATTTGATGCAATTGGAGGAATGATGTTTAAGGATGGATTCTTATACAAAACTGTATCAATAAAATCCATTAATGCTCAAAACATCAAACCTACTTTGAATGAACTTGAAAAATTTCGAAAACCTGGTGAGAGTGGTGACAGCGATGTAGCAAGTCTGTCAACTTTGTTCGCTAACAGAAAGAAAGGCCATTTTATGAAAGGTGATGCTGTAATCGTTGTGAAGGGTGATTTGAAGAAGTTGAAGGGGTGGGTGGAGAAAGTAGATGAAGATAATGTTCATATAAGACCAGAATTGAAGGGTCTTCCTAAAACCCTTGCTGTAAATGAAAGGGAACTTTGTAAATATTTTGAACCTGGAAACCACGTTAAGGTTGTTACTGGTGCTCAAGAGGGTGCTACCGGCATGGTTGTGAAGGTGGAACAGCATGTATTGATTCTATTATCCGACACAACAAAAGAACATATCCGTGTGTTTGCAGATGATGTTGTGGAGAGTTCTGAAGTGACCACTGGAATTACAAAAATTGGGGACTATGAACTTCGTGATCTTGTATTGTTAGATAATATGGACTTTGGTGTAATAATTCGTGTAGAAAGCGAGGCATTTCAGGTTCTTAAGGGGACTGCAGACAGGCCTGAAGTTGCACTTGTTAAATTAAGAGAGATTAAATGTAAGATAGAGAAGAAAATAAATGCGCAGGATAAGCATAAGAATACAGTCTCAGTAAAGGATGTTGTGCGAGTTGTCGAAGGTCCTTGCCATGGAAAATCTGGTCCTGTGGAGCACATATTTAGGGGGTTCTTGTTCATCTATGATCGCCATCATCTTGAACATGCAGGCTTTATATGTGCTAGGGCTGGCTCGTGTATGGTCGTTGGAGGTTCACGTTCGAGTGGTGACAGAAACGGTGATGCCTACTCGAGATTCCCTGGCCTTAGAACTCCACCTCGTATTCCCCAGTCCCCGAGAAGGTTTTCACGAGGAGGGCCTCCAATTGATTCTGGAGGAAGGCACAGGGGTGGAAGAGGACACGATGGTTTGGCTGGTGCAACAGTCAAAGTACGCCAGGGTGCTTATAAAGGTTATCGTGGACGTGTAATAGAAGTTAAAGGCACAACAGTTCGGGTTGAATTGGAGTCCCAAATGAAGGTTGTGACGGTTGATCGCAACCATATATCGGATAATGTAGCTGTAACCCCACAGCGTGAAACTCGATATTCGATTGGATGTGAAACCCCAATGCATCCTTCTCGAACTCCCCTACATCCATATATGACCCCTATGAGAGATCCTGGAGCAACTCCTATACATGATGGAATGAGGACACCAAGGCGTGACCGGGCATGGAATCCTTATACCCCAATGAGTCCGACAAGGGACTGGGAAGATGGAAATCCAGGCTCATGGGGAACCAGCCCACAGTCCCAGGCAGGAAGCTCACCTTCACGGCTATATGAAGCCCCCACTCCTGGTGCTGGTTGGGGTAGCACTCCTGGCGGAAACTATAATGAGGCTGGAACACCGCATGACTCATATGTAAATGTTGCGAGCCCATATTTACCATCAACACCTGGTGGGCAGCCTATGACGCCAAATTCCGCGGTGTATCTTCCCAGTACCCCTGGAGGACCACCCATGACTCCAGGAACTGGTGGTCTGGACATGATGTCCCCAGTTTTAGGTGGGGACAATGAGGGGCCATGGTTTATGCCAGACATATTAGTTAATGTACACAGGCCAGGTGAAGAATCTGTTGGAGTTATAAGAGAGGTTCTTCCGGATGGGTCTTGCAAGGTAGCGCTTGGCTCAAGTGGAAATGGTGAAACGATAACTGCCCTTCCCAATGAAATGGAGGCCGTGGTGCCAAGGAAATCAGACAAAATAAAGATAATGGGTGGAGCATTGAGGGGGTCTACAGGCAAGTTGATTGGTGTAGATGGTACTGATGGTATTGTAAAGGTAGATGACACATTGGAAGTCAAGATTTTAGACCTAGTTATTTTGGCCAAATTAGCTCAACCATGA 3087 0.4564 MSHRGMDDDDEEEYEEDEQVADFDEEAEEEEDDRGRGSGGRKRRRSDFIDDDAEEVDEDEEEEDDDDDYGGGGGRRRQNRKASASHFFDDIAEVDSDGEEEEEEGEDDFFVDNGNDIPEDNVGRSRLHRPLHEQDEDFEALERHIQERYARRVESFDEEATDVEQQALLPSVRDPKLWMVKCMIGRERETAVCLMQKYIDKGAELQIRSAIALDHLKNYIYVEADKEAHVREAIKGLRNIYGVSKITLVPIREMTDVLSVESKAIDLARDTWVRMKIGTYKGDLAKVVDVDNVRQRVTVKLIPRIDLQALANKLEGREVVKKKAFVPPPRFLNVDEARELHIRVEHRRDAYGERFDAIGGMMFKDGFLYKTVSIKSINAQNIKPTLNELEKFRKPGESGDSDVASLSTLFANRKKGHFMKGDAVIVVKGDLKKLKGWVEKVDEDNVHIRPELKGLPKTLAVNERELCKYFEPGNHVKVVTGAQEGATGMVVKVEQHVLILLSDTTKEHIRVFADDVVESSEVTTGITKIGDYELRDLVLLDNMDFGVIIRVESEAFQVLKGTADRPEVALVKLREIKCKIEKKINAQDKHKNTVSVKDVVRVVEGPCHGKSGPVEHIFRGFLFIYDRHHLEHAGFICARAGSCMVVGGSRSSGDRNGDAYSRFPGLRTPPRIPQSPRRFSRGGPPIDSGGRHRGGRGHDGLAGATVKVRQGAYKGYRGRVIEVKGTTVRVELESQMKVVTVDRNHISDNVAVTPQRETRYSIGCETPMHPSRTPLHPYMTPMRDPGATPIHDGMRTPRRDRAWNPYTPMSPTRDWEDGNPGSWGTSPQSQAGSSPSRLYEAPTPGAGWGSTPGGNYNEAGTPHDSYVNVASPYLPSTPGGQPMTPNSAVYLPSTPGGPPMTPGTGGLDMMSPVLGGDNEGPWFMPDILVNVHRPGEESVGVIREVLPDGSCKVALGSSGNGETITALPNEMEAVVPRKSDKIKIMGGALRGSTGKLIGVDGTDGIVKVDDTLEVKILDLVILAKLAQP 1028
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g02945 1028 ProSitePatterns Ribosomal protein L24 signature. 421 438 IPR005825 GO:0003735|GO:0005840|GO:0006412
Aip07g02945 1028 Coils Coil 146 166 - -
Aip07g02945 1028 Gene3D - 686 749 IPR014722 -
Aip07g02945 1028 MobiDBLite consensus disorder prediction 8 32 - -
Aip07g02945 1028 PANTHER TRANSCRIPTION ELONGATION FACTOR SPT5 29 1026 - -
Aip07g02945 1028 SMART nusgn_4 174 261 IPR006645 GO:0140673
Aip07g02945 1028 MobiDBLite consensus disorder prediction 33 50 - -
Aip07g02945 1028 MobiDBLite consensus disorder prediction 119 133 - -
Aip07g02945 1028 Pfam KOW motif 472 497 IPR005824 -
Aip07g02945 1028 Gene3D - 266 308 IPR014722 -
Aip07g02945 1028 SMART kow_9 469 496 IPR005824 -
Aip07g02945 1028 SMART kow_9 699 726 IPR005824 -
Aip07g02945 1028 SMART kow_9 593 620 IPR005824 -
Aip07g02945 1028 SMART kow_9 266 293 IPR005824 -
Aip07g02945 1028 SMART kow_9 417 444 IPR005824 -
Aip07g02945 1028 SMART kow_9 975 1002 IPR005824 -
Aip07g02945 1028 SUPERFAMILY Translation proteins SH3-like domain 461 520 IPR008991 -
Aip07g02945 1028 MobiDBLite consensus disorder prediction 51 68 - -
Aip07g02945 1028 CDD KOW_Spt5_2 418 468 IPR041975 -
Aip07g02945 1028 PANTHER SUPPRESSOR OF TY 5 29 1026 IPR039659 GO:0006357|GO:0032784
Aip07g02945 1028 MobiDBLite consensus disorder prediction 819 837 - -
Aip07g02945 1028 CDD NGN_Euk 176 259 IPR039385 -
Aip07g02945 1028 MobiDBLite consensus disorder prediction 788 863 - -
Aip07g02945 1028 MobiDBLite consensus disorder prediction 1 133 - -
Aip07g02945 1028 CDD KOW_Spt5_5 701 747 IPR041978 -
Aip07g02945 1028 MobiDBLite consensus disorder prediction 651 703 - -
Aip07g02945 1028 Pfam Spt5 transcription elongation factor, acidic N-terminal 87 170 IPR022581 -
Aip07g02945 1028 Gene3D - 412 469 IPR014722 -
Aip07g02945 1028 CDD KOW_Spt5_6 969 1026 IPR041980 -
Aip07g02945 1028 Gene3D - 472 521 IPR014722 -
Aip07g02945 1028 CDD KOW_Spt5_1 270 307 IPR041973 -
Aip07g02945 1028 CDD KOW_Spt5_4 604 639 IPR041977 -
Aip07g02945 1028 Gene3D - 156 259 IPR036735 GO:0006355
Aip07g02945 1028 PIRSF Spt5 2 1028 IPR017071 GO:0006357|GO:0032784
Aip07g02945 1028 Pfam Early transcription elongation factor of RNA pol II, NGN section 176 258 IPR005100 -
Aip07g02945 1028 CDD KOW_Spt5_3 469 519 IPR041976 -
Aip07g02945 1028 MobiDBLite consensus disorder prediction 93 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip07g02945 Aip-Chr7 115692779 115700572 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip07g02945 K15172 - gmx:100801380 1621.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip07g02945 07 115692779 115700572 Aip07g02945 07 115692779 115700572 ECH