Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g02867 ATGGGAGTTGTGACTGTTTCTAGCTCAGCTGCCAGGACACCACTAGGATTAAATACAAAGTTTAGCACTCATGGATCTGCCCTAAAGAGGCCTTTAGTCATAGCATTTAAAGGAGATAAGCACAATGATTCGGCACTGATTGCAACCAAAGAGAAAGTTCCTATCCACGTTGAAATGGAGAAAAGTAATAATAAGAAACGGATGGGAAAGATTAACAAATCGCCTAAGCGAGGGAGAACTATCTCCATAGAGGAATCTGCTATGTTGGACGTGGACTACAATGAGGCTGCTGCCATACTTGAAAACATATACAAACTTAGCTCTGCATCCGAAACTCACAATGCAGTATATATAGATACTAAGACCAAGAGAGTGTTGCGTCGGGAGAAGAAGATTGCTGATAAAGAAGGAGAGGTAAACAATAATGATAGGACCAGAGTGATTAGAAATAGAAACACCAAGACAAAACGATTAAGTCTTGATAAGAGGATTGCTTTGAAAAACAACATTCCCACTCCAAAGAAAAGAATTGTTAAGGATAACAGTGAGAAGATTGAGGAACTTGTTAGGGAATATTCAGGGTCGACGGATCTTGTTAGTTTGGACTGGAAGAAAATGAAAATACCTCCAGTTCTTCCTTCTTCAGAGCATACTTGGTTGTTCAAGTTGATGCAACCTATGAAGGCACTTCTTCAAGTGAAAGAGGATTTGCAGAAGGAGCTAGGTAGAGAACCTACAGAGGCTGAACTAGCTGACGCTACAAATATGAACGTTTCTCAAGTAAAGAAAACTATAGAAGTAGGCCGAGCTGCAAGAAACAAGCTGATCAAGCACAACCTCCGGCTTGTGTTATTTGTGATCAACAAATATTTTTGGGATTTTGGCAATAGCCCACGGTTTCAGGATCTGTGTCAGGCAGGAGTTAAAGGACTCATTACAGCAATTGATCGCTTCGAGCCGAACAGAAGATTCCGGCTATCCACCTACGGATTGTTTTGGATAAGACATTCCATCATTCGTTCAATGACCCTCTCAAGTTTTACACGTGTTCCCTTTGGACTTGAATCAGTTAGGGCAGAGATTCAAAGAGCTAAACTGGAGTTGACGTTTGAGCTTCAGAGGCAGCCAACAGATGAAGAAATAATGGAGAGAGCTCAAATTTCCCCAGAACGATACCATGATGTAATNGAGGAGTTTATAAATGGGATTACTGATGATGATGGTGTCAACGGTGATAATAGAAGGCAACATGCTCTACTAAGGCTTGCTCTTGATGATGTGCTTGATTCCCTGAAGCCAAAGGAGAGCTTGGTGATAAGACAGAGATTTGGACTGGATGGCAAGGGAGATAGAACATTGGGGGAAATAGCTGGGAACTTGAACATTTCTAGGGAAATGGTAAGAAAGCATGAAGTCAAGGCTCTCATGAAGCTCAAGCACCCAGCTCGATTGGATTATCTTCGTCGTTACGTTGTATAA 1479 0.4151 MGVVTVSSSAARTPLGLNTKFSTHGSALKRPLVIAFKGDKHNDSALIATKEKVPIHVEMEKSNNKKRMGKINKSPKRGRTISIEESAMLDVDYNEAAAILENIYKLSSASETHNAVYIDTKTKRVLRREKKIADKEGEVNNNDRTRVIRNRNTKTKRLSLDKRIALKNNIPTPKKRIVKDNSEKIEELVREYSGSTDLVSLDWKKMKIPPVLPSSEHTWLFKLMQPMKALLQVKEDLQKELGREPTEAELADATNMNVSQVKKTIEVGRAARNKLIKHNLRLVLFVINKYFWDFGNSPRFQDLCQAGVKGLITAIDRFEPNRRFRLSTYGLFWIRHSIIRSMTLSSFTRVPFGLESVRAEIQRAKLELTFELQRQPTDEEIMERAQISPERYHDVXEEFINGITDDDGVNGDNRRQHALLRLALDDVLDSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKLKHPARLDYLRRYVV 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g02867 492 Gene3D - 265 343 - -
Aip07g02867 492 TIGRFAM sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 271 480 IPR014284 GO:0003700|GO:0006352|GO:0006355
Aip07g02867 492 Gene3D - 348 397 IPR036388 -
Aip07g02867 492 Gene3D - 222 264 IPR036388 -
Aip07g02867 492 Pfam Sigma-70 region 2 275 341 IPR007627 GO:0003700|GO:0006352|GO:0006355
Aip07g02867 492 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 194 342 IPR013325 GO:0003700|GO:0006352|GO:0006355
Aip07g02867 492 Gene3D - 414 492 IPR036388 -
Aip07g02867 492 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 2 492 - -
Aip07g02867 492 Coils Coil 354 374 - -
Aip07g02867 492 Pfam Sigma-70, region 4 427 480 IPR007630 GO:0003700|GO:0006352|GO:0006355
Aip07g02867 492 Pfam Sigma-70 region 3 360 397 IPR007624 GO:0003700|GO:0006352|GO:0006355
Aip07g02867 492 Pfam Sigma-70 region 3 230 270 IPR007624 GO:0003700|GO:0006352|GO:0006355
Aip07g02867 492 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 347 396 IPR013324 -
Aip07g02867 492 PANTHER RNA POLYMERASE SIGMA FACTOR SIGE, CHLOROPLASTIC/MITOCHONDRIAL 2 492 - -
Aip07g02867 492 PRINTS Major sigma-70 factor signature 302 315 IPR000943 GO:0003700|GO:0006352|GO:0006355
Aip07g02867 492 PRINTS Major sigma-70 factor signature 452 467 IPR000943 GO:0003700|GO:0006352|GO:0006355
Aip07g02867 492 PRINTS Major sigma-70 factor signature 467 478 IPR000943 GO:0003700|GO:0006352|GO:0006355
Aip07g02867 492 PRINTS Major sigma-70 factor signature 326 334 IPR000943 GO:0003700|GO:0006352|GO:0006355
Aip07g02867 492 PRINTS Major sigma-70 factor signature 431 443 IPR000943 GO:0003700|GO:0006352|GO:0006355
Aip07g02867 492 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 398 487 IPR013324 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip07g02867 K03093 - gmx:100776369 718.383
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip07g02867 07 114567266 114571661 Aip07g02867 07 114567266 114571661 ECH