Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g02861 ATGGTGAAGCTAGCATCGGCGAGGGACTTCCGTACGTACGGGCCGGGCCTCACCAGAAACCGTTACGAGTACATCAACGCGGGGCTTTACCTGTTTTCCACCGTGGTCCTGAGTTGTGGTTTCGCATCTCAGTTTTCTTCCGAGGCTTCTTCGGGGCTCGTGGTTTTCCTCATTGCATTGGGCCTCATGTTAATCGTAAACTTTCATGACCTTATGGCGCATCTTGTTCCCATTGATTTCCGCTTTCAGTTGATGGCTTTTGATCCTCAGCTCGCCTTCGTCGAATTCGCTGTCCCCCTCTTCAACATGCTCGGAACGCTTCTTACTTTTCTTGCCGTTTTCTTCATTTTTCTTCAGGAAGAGAAAGGACATGGTTACTTCAAATTGGAAAAGCATGCTCTGAACATGTTGGTTGCTGGTCCTGTACTATGGGTGGTGGGATCGATTCACAATTCATGTCAAATCTACGAGAGAGCAGATGGTCATGTTCAAATCTTGCAGCAATGTGTGTATATCCCCTTCTTGATGGGGAGTATGTTGTTCATGATTAGTTCCTGCCTCAATTATATTGAGCAATCTAGAGTGATCCACCATGGCCTCGGCTTACTTGGTAGGGATTGGATCTGGTTAGGAATCTCGGGTACCATATTTTTCTTCATTGGTGGATTGATAAATGTGGTGAAAGTGTTCAAGATGCAACAAATGAATGGTATGAGGCTGGAGAAGCTGCGAGGTGGAGCACAAGAGCAACTAATAAGGGCGAGAGAAGGACATGTTCCCCTGCTTTCAGAACATCATCAAATAAGAATAAGACATAATCCACCACCTGAAGAAACCAAAGTTTCAAAGCCTCTTCCTACTCCTTATAAGGATGGTTGTTGTCTTAAAATGGCATCGGTGTCTAGTCAGCCGCAGTTCCGTTACACTCAGCCGCCGTCAAAGGTGCTTCATTTGAGAAACTTGCCATGGGAGTGCACAGAGGAGGAACTTGTTGAACTTGGAAAACCATTTGGGAAGGTTGTGAACACAAAATGCAACGTAGGAGCAAATCGAAATCAAGCGTTCATTGAATTTGCAGATTTAAATCAAGCCATTGCAATGATATCGTACTATGCGTCATCTTCGGAGCCGGCTCAAGTACGAGGGAAAACTGTATATCTGCAATATTCAAATAGGCAAGAAATAGTGAATAACAAAACCGCTGCAGATGTTCCTGGGAATGTATTGTTGGTGACAATTGAGGGTGCGGATGCACGCCTAGTCAGCATTGATGTTTTGCACTTGGTATTTTCAGCCTTTGGGTTTGTGCATAAGATTACTACCTTTGAGAAGACAGCAGGATTCCAGGCCCTGGTGCAATTCTCAGATGCAGAGACTGCCACATCTGCTAAGGATGCTTTGGATGGAAGAATAATTCCTAGGATTACTTATTCTGGACATTCAGATCTAAGTGTTAAGTTTCAGAGCCATAGGAGCAGAGACTACACAAATCCTTACCTTCCTGTTGCTCAGTCAGCTATGGAAGGAAGTGGTCAGGCCGTGGTAGGTTTGGATGGGAAAAGAATAGAGACTGAGAGCAATGTTCTTCTTGCATCTATTGAGAATATGCAATATGCTGTGACATTGGATGTCTTACACATGGTTTTCTCTGCTTTTGGTCCTGTTCAAAAGATTGCAATGTTTGATAAGAATGGTGGTTTACAGGCTCTGATTCAATATCCAGATATACAGACAGCTGTTGTGGCCAAGGAAGCTTTGGAAGGACACTGCATATATGATGGAGGGTTTTGCAAGCTTCACATATCATACTCGCGTCATACTGATCTTAGTATAAAGGTCAACAATGACAGGAGTAGGGATTATACCATTCCCAATACACCAGTGGTGAACCCCCAGCCGTCACTCTTAGGGCAACATCCTGTTCCCATGGTTGGTGCCCCTAGTCAACAGTACAATGGGGCTCCACCTCCGGCTCAGTATACTCCAATTTCCGAGCAGACTATGCTGCCCCCGTCTCAGGCTGCTTGGGGGGCAGCACCGCAGGCAGGACCTCAGTCTATGCCACAGTCCATGCCACAGTCTATGCCAATGCAAATGCATAACAATGCTTACATGCCACCACCTGGATCTATGCCACCACAAGTGGCTCCTGGAATGCACTATCCAACTCACAGCATGCAATCGACGCCGACATTGCCCACATATGGATCTGATCGCATACAATAG 2226 0.4569 MVKLASARDFRTYGPGLTRNRYEYINAGLYLFSTVVLSCGFASQFSSEASSGLVVFLIALGLMLIVNFHDLMAHLVPIDFRFQLMAFDPQLAFVEFAVPLFNMLGTLLTFLAVFFIFLQEEKGHGYFKLEKHALNMLVAGPVLWVVGSIHNSCQIYERADGHVQILQQCVYIPFLMGSMLFMISSCLNYIEQSRVIHHGLGLLGRDWIWLGISGTIFFFIGGLINVVKVFKMQQMNGMRLEKLRGGAQEQLIRAREGHVPLLSEHHQIRIRHNPPPEETKVSKPLPTPYKDGCCLKMASVSSQPQFRYTQPPSKVLHLRNLPWECTEEELVELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTAADVPGNVLLVTIEGADARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDAETATSAKDALDGRIIPRITYSGHSDLSVKFQSHRSRDYTNPYLPVAQSAMEGSGQAVVGLDGKRIETESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDIQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTIPNTPVVNPQPSLLGQHPVPMVGAPSQQYNGAPPPAQYTPISEQTMLPPSQAAWGAAPQAGPQSMPQSMPQSMPMQMHNNAYMPPPGSMPPQVAPGMHYPTHSMQSTPTLPTYGSDRIQ 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g02861 741 MobiDBLite consensus disorder prediction 706 741 - -
Aip07g02861 741 PANTHER MATRIN 3/NUCLEAR PROTEIN 220-RELATED 297 733 - -
Aip07g02861 741 CDD RRM1_PTBPH1_PTBPH2 312 392 IPR034792 -
Aip07g02861 741 SUPERFAMILY RNA-binding domain, RBD 532 627 IPR035979 GO:0003676
Aip07g02861 741 MobiDBLite consensus disorder prediction 673 692 - -
Aip07g02861 741 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 405 472 - -
Aip07g02861 741 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 314 392 IPR000504 GO:0003723
Aip07g02861 741 Pfam RRM-like domain 526 604 IPR021790 -
Aip07g02861 741 CDD RRM3_PTBPH1_PTBPH2 526 622 IPR034794 -
Aip07g02861 741 PANTHER POLYPYRIMIDINE TRACT-BINDING PROTEIN HOMOLOG 2 297 733 - -
Aip07g02861 741 SMART rrm1_1 530 600 IPR000504 GO:0003723
Aip07g02861 741 SMART rrm1_1 315 388 IPR000504 GO:0003723
Aip07g02861 741 SUPERFAMILY RNA-binding domain, RBD 421 500 IPR035979 GO:0003676
Aip07g02861 741 MobiDBLite consensus disorder prediction 721 741 - -
Aip07g02861 741 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 318 369 IPR000504 GO:0003723
Aip07g02861 741 Gene3D - 408 505 IPR012677 -
Aip07g02861 741 Gene3D - 525 630 IPR012677 -
Aip07g02861 741 SUPERFAMILY RNA-binding domain, RBD 302 397 IPR035979 GO:0003676
Aip07g02861 741 Gene3D - 301 407 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip07g02861 Aip-Chr7 114390348 114406314 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip07g02861 K14948 - vvi:100855089 1017.68