Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g02849 ATGGAGGACGGCGCAGGAAGAGGTTTGGGATGCCAGAAGACTATGGATGGGAAGGCGAGTAACGGGAATGGTGTAGGAAAGGAAATTCCTTCCTGTTGTTTGAAGGCTTTGGCTTCATCCCCTGAGTCTGAGGCAAAGTGTCATTCCACTGTTGTTTCTGGCTGGTTCTCGGCATCTCAGACTCATTCTGGCAAGTCAAGGAAAGTTCAATATTTTAACAATCCAATGTGGCCAGGAGAAGCTCATTCCATCAAAGTTGAGGAGATCCTCTTCAAGGAAAAGTCAGAGTACCAAGAAGTCTTGGTTTTTCAGTCGGCGGCATATGGGAAAGTGCTGGTGCTTGACGGGATTGTTCAGTTGACTGAGAAGGATGAATGCGCTTATCAGGAGATGATTGCTCATCTTCCCCTTTGTTCAATTGAGTCCCCCAAAAATGTTTTAGTTGTTGGTGGAGGAGATGGTGGGGTTCTAAGAGAAGTATCCCGCCACAGCTCTGTTGAACACATTGATATTTGTGAGATAGATAAGATGGTTATTGATGTATCTAGGAAGTATTTTCCGGAGTTAGCCATTGGGTTTGAAGATCCTCGAGTACACCTGCATGTTGGTGATGCTGTTGATTTTCTTAAACGTGCTCCTGAAGGAAAGTATGATGCCATCATTGTTGATTCCTCGGACCCTGTCGGTCCTGCTCAGGAACTTGTAGAGAAACCATTTTTTGATACAATAGCTAAAGCTTTAAGGCCTGGTGGAGTTCTTTGTAATATGGCTGAAAGCATGTGGCTTCATACACACCTTATTCAAGACATGATTTCCATTTGTCAAGAAACATTCAAAGGTTCTGTACACTATGCATGGGCAAGTGTTCCAACATATCCAAGTGGCGTTATAGGCTTTCTTCTGTGCTCGACAAAGGGGCCTCCTGTTGATTTTGTGAAGCCCATCAACCCCATCGAAAAGATAAAAGGTGCTGATAAGCATGGAAGAGAACTTCGGTTCTATAACTCACAGATGCATTCAGCTGCTTTTGCATTGCCCACATTTCTGAAGAGGGAGGTGAGCTTGCTGCGAGATAAGCTTGATCAGTAA 1089 0.4435 MEDGAGRGLGCQKTMDGKASNGNGVGKEIPSCCLKALASSPESEAKCHSTVVSGWFSASQTHSGKSRKVQYFNNPMWPGEAHSIKVEEILFKEKSEYQEVLVFQSAAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIESPKNVLVVGGGDGGVLREVSRHSSVEHIDICEIDKMVIDVSRKYFPELAIGFEDPRVHLHVGDAVDFLKRAPEGKYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMWLHTHLIQDMISICQETFKGSVHYAWASVPTYPSGVIGFLLCSTKGPPVDFVKPINPIEKIKGADKHGRELRFYNSQMHSAAFALPTFLKREVSLLRDKLDQ 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g02849 362 Coils Coil 353 362 - -
Aip07g02849 362 Pfam Spermidine synthase tetramerisation domain 75 122 IPR035246 -
Aip07g02849 362 Gene3D Vaccinia Virus protein VP39 120 355 IPR029063 -
Aip07g02849 362 PIRSF Spermidine_synth 42 357 IPR030668 GO:0006595
Aip07g02849 362 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 53 304 IPR030374 -
Aip07g02849 362 PANTHER SPERMIDINE/SPERMINE SYNTHASE 1 359 IPR001045 GO:0003824
Aip07g02849 362 TIGRFAM speE: spermidine synthase 79 348 IPR001045 GO:0003824
Aip07g02849 362 Hamap Polyamine aminopropyltransferase [speE]. 54 354 IPR001045 GO:0003824
Aip07g02849 362 Pfam Spermine/spermidine synthase domain 125 310 - -
Aip07g02849 362 MobiDBLite consensus disorder prediction 1 22 - -
Aip07g02849 362 Gene3D Spermidine synthase, tetramerisation domain 46 119 IPR037163 -
Aip07g02849 362 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 146 159 IPR030373 -
Aip07g02849 362 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 71 352 IPR029063 -
Aip07g02849 362 CDD AdoMet_MTases 167 253 - -
Aip07g02849 362 PANTHER SPERMINE SYNTHASE 1 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip07g02849 Aip-Chr7 114260819 114264875 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip07g02849 K00797 - gmx:100815244 651.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip07g02849 07 114260819 114264875 Aip07g02849 07 114260819 114264875 ECH