Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g02788 ATGGGGTGCAAGTATTCAAAGAAAGTCATAAATAAAGTACCGGGTTACGAGGAACCCATTGTTCTTGCTTCTCAGACACCTTGTGAGTATCCATCATCAGCTGTTAATGTGAGTGAAGTTGAGGCCTTATATGAGCTTTACAAGAAGTTGAGCAATTCAATTATTGCAGATGGTCTTATTCACAGGGAAGAATTCCAACTTGCACTCTTCAGGAATAAAAACAAGAGAAATCTGTTTGCGGACAGGATTTTTGATCTATTTGATATCAAGAAAAATGGGGTCATTGAGTTTGGAGAATTTGTTCGATCATTGGGTGTATTTCACCCAGATGCATCTATGGAAGACAAGATCAAATTTGCTTTTAGGTTATATGATCTAAGGCAGACAGGGTATATTGAACGTGAAGAGTTGAAGGAGATGGTGTTGGCACTTCTACACGAGTCTGATCTTGTGCTTTCAGTTGATATCGTGGAATCCATCGTGGATAAGACTTTTAGTGATGCTGATACAAAAGGTGATGGAAGGATTGATCAGGATGAGTGGAAAGCATTTGTGTCTAAGCATCCATCCTTGATAAAGAACATGACTCTACCATATCTAAAGTCAGTATAA 612 0.3856 MGCKYSKKVINKVPGYEEPIVLASQTPCEYPSSAVNVSEVEALYELYKKLSNSIIADGLIHREEFQLALFRNKNKRNLFADRIFDLFDIKKNGVIEFGEFVRSLGVFHPDASMEDKIKFAFRLYDLRQTGYIEREELKEMVLALLHESDLVLSVDIVESIVDKTFSDADTKGDGRIDQDEWKAFVSKHPSLIKNMTLPYLKSV 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g02788 203 PANTHER CALCINEURIN B-LIKE PROTEIN 4 1 201 - -
Aip07g02788 203 Pfam EF-hand domain pair 57 102 IPR002048 GO:0005509
Aip07g02788 203 Gene3D - 31 203 - -
Aip07g02788 203 SUPERFAMILY EF-hand 35 199 IPR011992 -
Aip07g02788 203 SMART efh_1 116 144 IPR002048 GO:0005509
Aip07g02788 203 SMART efh_1 160 188 IPR002048 GO:0005509
Aip07g02788 203 SMART efh_1 79 107 IPR002048 GO:0005509
Aip07g02788 203 Pfam EF-hand domain pair 114 184 IPR002048 GO:0005509
Aip07g02788 203 CDD EFh 116 186 IPR002048 GO:0005509
Aip07g02788 203 PANTHER CALCINEURIN B 1 201 IPR045198 GO:0005509|GO:0019722|GO:0019900
Aip07g02788 203 ProSiteProfiles EF-hand calcium-binding domain profile. 112 147 IPR002048 GO:0005509
Aip07g02788 203 ProSiteProfiles EF-hand calcium-binding domain profile. 75 110 IPR002048 GO:0005509
Aip07g02788 203 PRINTS Recoverin family signature 176 196 - -
Aip07g02788 203 PRINTS Recoverin family signature 130 148 - -
Aip07g02788 203 PRINTS Recoverin family signature 83 104 - -
Aip07g02788 203 ProSiteProfiles EF-hand calcium-binding domain profile. 156 191 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip07g02788 Aip-Chr7 112999181 113004001 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip07g02788 32 203 EF-hand Containing Proteins AT5G24270 76.163 1.91e-95 274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip07g02788 K06268 - mnt:21390233 322.783
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip07g02788 07 112999181 113004001 Aip07g02788 07 112999181 113004001 ECH