Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g01769 ATGCGTGTTACCGTGGATCTAGGGTCCGACGTTTCGGCCCCCACTTCTGCCGCTCCGGCGAAGAGCAATCAGTGTGCCGTGTGCTTCTGCCCCACCACGACGCGCTGTTCACGTTGCAAAGCGGTTCACTATTGTTCTGGTAAGTGTCAAATCGTTCACTGGCGTCAAGGTCACAAAGATGAATGCCGTCCTCCCAGTAATATTTGCCAGATTAATGACCGGGTAAGTGATCTTGGCAAAAAGGTTGCAGCACCACATGAAGTCCATGATGAGAAGTCTAAGATCGAGAGCATAGGGCATAAAACATCCCCTGAGGAACCTCTGTCATCCGAGGCTAGTTTATCTCCTGAAAGCTCATTTAGAAAGGATGATAACAGAAGAGTTGAGTCTTTAGGTGAGGGAAATATTACGGACTCTGCATTTTCTGGATTCTCGGCTTCCAATACTAACAGTGAATCATCTGATGATTCCTCTGTATGTGAGAGCATATCAAATGAACATGAGAGAACGGAGGGACACATCTTTGTTGAACCCACCCTTGAAAATTCTGATTCCGTTGAAACTGAGAACAAGATAGGTGTTGCCGTTTCATTGTCGCCTAAATTTGCTAGTTTGGTTGATGAAGCAGGTGGTTTTTCTTCAATGTCAAAATTAAATAGAGTTAGACCTGGTTTTAATAAAGAAGAAAATAAACACACAACAACTGGTAGCTTGGGTTTGAATATGGGGAAGGGGCCAACAATTGAGTCTCCCACAGTGTCATCCGGTTTTTGGGATAAAACTCTTGATTCGAGGGTTATCAAAGATGATGATAACAGTGGCGCCCAACCTCGCCACTTTGATGATGCTCCTCCAAAGTCTTCTGGAAAGGAAACGTCATGTGCTGGATTGGCATCTTCAGAGAATGAAGGTTTTTCACGGGATTCAAGCATCCAAAAGTTGCAATCTGTTGGCTCCAAGGTGTCAAATCATGATGTGAACAACCCTGATAGCACCTTGCAGTCAGCTGAAATTAAATATCTGCCACATGCATTGGATGGTACTACATTGGTCTCTAAAGCCAAAGAGCATTCACAGTATGATATGAAATCTCGAAGTAATGGCATTCAATCTGGTACTGCAACTTCAACTCAGAATGTTAGCGATTCTCTGCATTCTGAGAATGGGACAAAAATCTCTAGTCTAAAAGTTGTTGATCAGTTTAAAGGAGCAAATTTGACACAAAACTTATCAATGGCTGTTGGGAGTGATATTGCTAGAAGATATAGTGACCAGGTTCTATTTCCATATGATTTATTTGTTAAGCTTTATAACTGGAACAGAGTGGAGTTACAACCATTTGGTCTTATAAATTGTGGAAACAGTTGTTATGCTAATGCTGTACTCCAGTGCTTAGCATTTACGCCACCGCTAACTGCTTACTTGCTTCAAGGACTTCATTCTAAATCATGTGCAAATAAAAAACTGTGTTTTGCCTGTGAACTTGAAAGTTTGATTCTGAAATCCAAGGAAACAAAATCTGCACTATCACCTGTGGGCATACTGTCTAAACTACAAAGTATTGGAAGTCAACTTGGTAATGGAAAGGAAGAAGATGCACATGAATTCCTAAGGCATGCTATTGAGGCAATGCAATCTGTTTTCCTTATGGAATCAGAGTTTAATGCATTAGACTCATTAAAAGAGGAGACAAATTTAATGGGCCTAACGTTCGGAGGCTACCTTCGATCCAAGATACAATGCATGGAATGTGGAGGGAAATCTGAGCGTCATGAAAGGATGATGGATCTGACTGTTGAGATAGACGGGGATATAGCATCCTTGGAGGAGGCTCTTCGCCGTTTTACAAGCACTGAAACTCTAGATGGAGAGAACAAGTACAACTGTGTCAGCAGATGTAAATCTTATGAGAGGGCCAAGAAGAAATTGACAGTTTCAGAAGCACCTAATGTTCTTACAATTGTATTAAAGAGATTTCAGTCTGGAAAATTTGGGAAGCTCAATAAGCCCATTCAGTTTCCTGAAATACTCAACTTTGCACCTTTCATGAGTGGGACTAGTGATAGATCACCTATATACAGGCTGTATGGGGTAGTTGTTCATTTGGATATCATGAATGCTGCCTTTTCTGGTCACTACGTGTGCTATGTGAAGAATTTCCAAAATAAGTGGTTCAAGGTTGACGATAGTGTGGTGACAGCTGTTGAATTGGACAAAGTTTTGAAGGAGGGGGCGTACATGCTTTTTTATGCAAGGTGCTCACCGAGGGCCCCAAAATTAATCAGAAGCAGGATAGTATCCGATTCAAAAATCAAAGTCCATGGAAAAGCTTTTATAATGAAATCAAGACATGTACCTTCAGATTCTGGTGCCTCTGAACGCATGACTAGTAGGGATGGTGCTGCCACCTTAGACACCCTCTATTCAAAGTTTTACCACATAAGAAGGGTTTTGGAAGACGACATGAGTGATAATTCATCTCTTTTCAGCAGCAATTCAGATGAAGGTTCTTGCAGCACCGATAGCACCCATGATTCAACCAGTAATGAGGACTTTGCTGAGTATATTTTCCGTGATTCGGGGCGTG 2587 0.4179 MRVTVDLGSDVSAPTSAAPAKSNQCAVCFCPTTTRCSRCKAVHYCSGKCQIVHWRQGHKDECRPPSNICQINDRVSDLGKKVAAPHEVHDEKSKIESIGHKTSPEEPLSSEASLSPESSFRKDDNRRVESLGEGNITDSAFSGFSASNTNSESSDDSSVCESISNEHERTEGHIFVEPTLENSDSVETENKIGVAVSLSPKFASLVDEAGGFSSMSKLNRVRPGFNKEENKHTTTGSLGLNMGKGPTIESPTVSSGFWDKTLDSRVIKDDDNSGAQPRHFDDAPPKSSGKETSCAGLASSENEGFSRDSSIQKLQSVGSKVSNHDVNNPDSTLQSAEIKYLPHALDGTTLVSKAKEHSQYDMKSRSNGIQSGTATSTQNVSDSLHSENGTKISSLKVVDQFKGANLTQNLSMAVGSDIARRYSDQVLFPYDLFVKLYNWNRVELQPFGLINCGNSCYANAVLQCLAFTPPLTAYLLQGLHSKSCANKKLCFACELESLILKSKETKSALSPVGILSKLQSIGSQLGNGKEEDAHEFLRHAIEAMQSVFLMESEFNALDSLKEETNLMGLTFGGYLRSKIQCMECGGKSERHERMMDLTVEIDGDIASLEEALRRFTSTETLDGENKYNCVSRCKSYERAKKKLTVSEAPNVLTIVLKRFQSGKFGKLNKPIQFPEILNFAPFMSGTSDRSPIYRLYGVVVHLDIMNAAFSGHYVCYVKNFQNKWFKVDDSVVTAVELDKVLKEGAYMLFYARCSPRAPKLIRSRIVSDSKIKVHGKAFIMKSRHVPSDSGASERMTSRDGAATLDTLYSKFYHIRRVLEDDMSDNSSLFSSNSDEGSCSTDSTHDSTSNEDFAEYIFRDSGR 862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g01769 862 MobiDBLite consensus disorder prediction 117 131 - -
Aip07g01769 862 MobiDBLite consensus disorder prediction 135 160 - -
Aip07g01769 862 MobiDBLite consensus disorder prediction 230 259 - -
Aip07g01769 862 Pfam MYND finger 25 62 IPR002893 -
Aip07g01769 862 MobiDBLite consensus disorder prediction 83 101 - -
Aip07g01769 862 SUPERFAMILY Cysteine proteinases 443 756 IPR038765 -
Aip07g01769 862 MobiDBLite consensus disorder prediction 825 852 - -
Aip07g01769 862 MobiDBLite consensus disorder prediction 83 168 - -
Aip07g01769 862 Gene3D Cysteine proteinases 440 762 - -
Aip07g01769 862 MobiDBLite consensus disorder prediction 363 387 - -
Aip07g01769 862 ProSiteProfiles Zinc finger MYND-type profile. 25 62 IPR002893 -
Aip07g01769 862 Pfam Ubiquitin carboxyl-terminal hydrolase 447 750 IPR001394 GO:0004843|GO:0016579
Aip07g01769 862 SUPERFAMILY HIT/MYND zinc finger-like 21 66 - -
Aip07g01769 862 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 448 463 IPR018200 GO:0004843|GO:0006511
Aip07g01769 862 MobiDBLite consensus disorder prediction 223 330 - -
Aip07g01769 862 Gene3D - 12 66 - -
Aip07g01769 862 MobiDBLite consensus disorder prediction 292 330 - -
Aip07g01769 862 ProSitePatterns Zinc finger MYND-type signature. 25 62 IPR002893 -
Aip07g01769 862 MobiDBLite consensus disorder prediction 262 277 - -
Aip07g01769 862 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 447 753 IPR028889 -
Aip07g01769 862 PANTHER UBIQUITINYL HYDROLASE 1-RELATED 22 862 - -
Aip07g01769 862 MobiDBLite consensus disorder prediction 825 846 - -
Aip07g01769 862 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 22 862 - -
Aip07g01769 862 MobiDBLite consensus disorder prediction 356 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip07g01769 Aip-Chr7 39110123 39116057 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip07g01769 425 770 Miscellaneous Gene Families AT4G31670 48.286 8.15e-118 370
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip07g01769 K11855 - gmx:100782303 1066.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip07g01769 07 39110123 39116057 Aip07g01769 07 39110123 39116057 ECH