Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g01707 ATGGCCATGGCTCTTCGTAGACTCTCCTCCACTCTTAACAAACAAACATATTCCCTTTATCGCATGTCTTCTTCTCTGTCGCCGCAAGAGAGAGACAAAGCTCGCGCTGCCTGGGTGAAGCAGCTCAACGAGCCTCTCGAAGTCATTGATCCTGAGATCGCCGAAATAATCGAACTCGAAAAAGCTCGTCAATGGAAGGGGCTGGAACTCATACCTTCGGAGAACTTCACGTCACTGTCAGTGATGCAAGCTGTTGGATCCGTGATGACAAACAAATACAGCGAAGGGTATCCGGGAGCTAGATACTACGGAGGAAATGAGTACATTGACATGGCCGAGACCTTGTGTCAGAAACGTGCACTTGAAGCTTTCAATTTGGATCCAGCAAAATGGGGAGTTAATGTGCAGTCATTATCTGGCTCCCCTTCCAACTTCCAAGTTTACACTGCTTTATTGAAGCCTCATGAGAGAATTATGGCACTTGATCTTCCACATGGTGGGCATTTGTCACATGGCTATCAGACTGACACCAAGAAGATATCAGCTGTATCTATATTCTTTGAAACGATGCCATACAGATTGGATGAAAGCACTGGTTATATTGATTATGACCAGTTGGAGAAAAGTGCTGCACTTTTTAGGCCAAAATTAATAGTTGCTGGTGCCAGTGCTTATTCCCGCCTTTATGATTATGCAAGAATTCGCAAGGTCTGTGATAAGCAGAAGGCAATTATGTTGGCTGATATGGCACACATCAGTGGATTGGTTTCTGCAGGTGTTATTCCTTCTTGTTTTGATTATGCAGATGTTGTGACAACCACAACACATAAGTCACTCCGTGGACCACGTGGGGCAATGATCTTCTTCAGGAAGGGTCTGAAAGAGATAAACAAGCAAGGGAAGGAAGTGTTCTATGACTATGAAGATAAAATAAATCAGGCTGTTTTTCCCGGACTTCAAGGTGGTCCACACAACCACACGATTTCAGGCTTAGCAGTTGCACTGAAGCAGGCTATGACACAAGAATTCAAGGATTACCAAAAGCAAGTTGTCAGTAATTGTGCGGTATTCTCACAGAGTTTGCTAGAGAAAGGCTACGATATTGTATCTGGTGGAACTGATAACCATCTATTGTTAGTTAACTTAAGAAACAAGGGCATCGATGGCTCAAGGGTAGAGAAGGTGTTAGAAGCAGTTCATATAGCAGCCAATAAAAATACTGTTCCAGGGGATGTGTCTGCTATGGTTCCCGGAGGCATCCGAATGGGGACCCCTGCTCTCACATCAAGAGGGTTTGTTGAGGAGGATTTTAAGAAAGTAGCTGAATTTTTTGATTTAGGAGTCAAGTTAGCCTTACAGATTAAGGCAAATACCAAAGGTACGAAGTTGAAAGATTTTGCTGCAGAAATGCAATCAGATGCATGCCAATCTGATATTGCAAAGCTCCGTCATGAAGTTGAGGAATATGCAAAGCAGTTCCCCACAATTGGCTTTGAGGTGGAGAAAATGAAACTTGATAGAGCTGCCATCAATCCAATTCCCAGTTCTAGAAAAGATGATTTGGTTGCGGACTATGTGAATGACAAAGGTGAATGGAATATCGTGAATATTCAGAAGTTTCTGCCTGAACACATCATAAATATCATTAAATTCATCCCTCCCCCAAAGAAAGATTTGCAAGATTCAATTTGTTGGGAATTAACTACTGATGGATGTTACACTGTTGTATCTGCTTATAAAGAACTTACCAAGACAACAAATATTGAGTGCACGTCCAAATGGATGTCAATTTGGAAGTGGAAGGGACCAGAGAGAATAAAAGTTTTCATGTGGCAGGTTTTTCATGAAAGAATTCTGACAGCAAGTAGAAGAGGCAGAATGCTAAGGACAAATCCAAATTGCCATTGCTGCACTGGACACCCTAAAACAGCACTCCATGTTTTGAGGGATTGTCCGAGAGCCTCAAGAATTTGGACTCAACTCTTAAACCCAGCCGCGGTTGCGGTCTTCTTTGGTTTAGACTTAGAAGGGTGGATAAATTTCAATCTTAAAAATGATCTTGGGAAGCACTCCCTGTTGGATTGGAAGGATGAGTTTTTTGAACACAGCCCAAAATTTCAAGGAAGCTTATCAAAGAAAACAGCAGGGGATGAAAGGAAGAAAATCACAGTCTCAACAGTATATCATTGGACTATACCTCCCAAGGGATGGATAAAGGTGAATACTGATGGAGTTGTAGGAGACAACAGGACAAAAGCATGTTGTAGAGGTCTCCTCAGAACTCACGAGGGAGAGTGGTTGGCGAGATTTCAATCTAACGTGGGATGTTGTTCGATTTTGGAAACAGAATTGTGGGGAGCCTACCATGGGATGAGAATGGCGTGGGAATTAGGCATGAGAAGACTTATCGTGGAAGTGGATTCAACTGAGGTCTATGACATTTTGAACCAGAAGTTTCAATCGCAGAAGACCAATGCCCTTTTAAGAAATATACAGGACATGATAAATAGATTATGGAAGCTTGCTTTCAATCACACCCTCCGTGAAGACAACGAATGCACTGATTGA 2568 0.4248 MAMALRRLSSTLNKQTYSLYRMSSSLSPQERDKARAAWVKQLNEPLEVIDPEIAEIIELEKARQWKGLELIPSENFTSLSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAETLCQKRALEAFNLDPAKWGVNVQSLSGSPSNFQVYTALLKPHERIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLDESTGYIDYDQLEKSAALFRPKLIVAGASAYSRLYDYARIRKVCDKQKAIMLADMAHISGLVSAGVIPSCFDYADVVTTTTHKSLRGPRGAMIFFRKGLKEINKQGKEVFYDYEDKINQAVFPGLQGGPHNHTISGLAVALKQAMTQEFKDYQKQVVSNCAVFSQSLLEKGYDIVSGGTDNHLLLVNLRNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFKKVAEFFDLGVKLALQIKANTKGTKLKDFAAEMQSDACQSDIAKLRHEVEEYAKQFPTIGFEVEKMKLDRAAINPIPSSRKDDLVADYVNDKGEWNIVNIQKFLPEHIINIIKFIPPPKKDLQDSICWELTTDGCYTVVSAYKELTKTTNIECTSKWMSIWKWKGPERIKVFMWQVFHERILTASRRGRMLRTNPNCHCCTGHPKTALHVLRDCPRASRIWTQLLNPAAVAVFFGLDLEGWINFNLKNDLGKHSLLDWKDEFFEHSPKFQGSLSKKTAGDERKKITVSTVYHWTIPPKGWIKVNTDGVVGDNRTKACCRGLLRTHEGEWLARFQSNVGCCSILETELWGAYHGMRMAWELGMRRLIVEVDSTEVYDILNQKFQSQKTNALLRNIQDMINRLWKLAFNHTLREDNECTD 855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g01707 855 Gene3D Aspartate Aminotransferase, domain 1 50 494 IPR015422 GO:0003824
Aip07g01707 855 Pfam Serine hydroxymethyltransferase 47 443 IPR039429 -
Aip07g01707 855 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 22 505 - -
Aip07g01707 855 Coils Coil 472 492 - -
Aip07g01707 855 Pfam Reverse transcriptase-like 741 853 IPR002156 GO:0003676|GO:0004523
Aip07g01707 855 ProSitePatterns Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 269 285 IPR019798 GO:0030170
Aip07g01707 855 Gene3D - 75 348 IPR015421 GO:0003824
Aip07g01707 855 SUPERFAMILY PLP-dependent transferases 37 498 IPR015424 -
Aip07g01707 855 SUPERFAMILY Ribonuclease H-like 736 851 IPR012337 -
Aip07g01707 855 CDD SHMT 50 489 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Aip07g01707 855 Hamap Serine hydroxymethyltransferase [glyA]. 45 497 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Aip07g01707 855 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 22 505 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Aip07g01707 855 CDD RNase_H_like 740 855 IPR044730 -
Aip07g01707 855 Pfam zinc-binding in reverse transcriptase 573 658 IPR026960 -
Aip07g01707 855 Gene3D - 736 855 IPR036397 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip07g01707 Aip-Chr7 35209546 35217576 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip07g01707 725 855 Glycoside Hydrolase AT2G33160 26.316 2.84e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip07g01707 K00600 - gmx:100816213 898.656
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip07g01707 07 35209546 35217576 Aip07g01707 07 35209546 35217576 ECH