Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g00299 ATGGACGACAACGACGTGGAGGACGTTGAAGCCGTTCCTCAGGTTTACATGGCTTGCATCTTACACGGTCACAGAATAGGAGTTTCTTACTATGATTCCAGTGTTCGCCAACTTTATGTGCTTGAAGTATGGGATGATGGTGACAAGCTTTATCCAGTAATTGATATGGTGAAATATCAAGCAAACCCTGTAATAATTTATACAAGCTCTAAATGTGAGGAATCCTTCTTATCTGCTCTGCAACGAAGTGATGAAGCAGCCGAGGCTCCTCAAGTAAAGCTTGTTAAAAGCTCAATATTCAGTTATGAGCAAGCATGGCATAGATTAATTTACCTGCGAGTGGTGGGAATGGATGAAGGATTAAATGAAAAGGAGAGGGTTTATTATTTGAGTTCTATGATGGACATGGGAAGTGAAGTACAAGTTCGTGCTAGCGGTGGTCTTCTTGCAATATTAGAGAATGAAAGGATTGTAGATACTCTTGAGCAAATGGAATCTGGAAACACATCAATTACAGTAGATTCTGTAGCAGAAATTTCATTACATAAGTTTCTCAAACTTGATGTAGCAGCACATGAAGCCTTACAAATATTCCAAATGGACAAGCACCCTAGCCACATGGGCATTGGTAGACCAAAAGAAGGTGAATCAGTTTCTTTTGAAATGACAAATCCTTTGTCCTGTATGCAGTGTGTGACTCCAATGGGTAGACGTCTTTTGAGAAACTGGTTCATGAGGCCTATACTTGATCTTGAAGTTCTGAACTACCGTTTAAATTCTGTATCTTTCTTTCTATGCTCAGAAGAATTGGTCGTTTCTTTACGTGACACCCTGAAATCTGTGAAGGATATTCCCTACTTGCTAAAGAAATTTGACTCTCCGAGCTCCATATGCACCAGCTCTGATTGGACAGCTCTTCTCAAGAGTATTTGTGCGCTGTTGCATTTGGGAAAGATATTTGAAGTTGGGATTTCAGAAGGTCTTCGAGAAGAACTTAAATACTTGAATCTGGATATTGTTGAAAAGGCAAGTTCATCCATATCAACGGAACTTGCTTATGTCTATGAGCTGGTAATTGGTGTTATTGACGTAAACAGAACTAAAGAGAAGGGATATGCAACAATAGTGAAAGAAGGTTTCTGTGATGAGTTGGATGAGTTGAGGCAAATATATGAGGAACTGCCAGAATTTCTCCAACAGGTTTCATCATTAGAATTGGCACAATTTCCTGTTATATTCAAGGACAAGCCTATTCCTTGTATAGTTTACATACAGCAGATAGGATATTTGATGTGTATCTTTGAAGAAAAACTTGAAGAAACCACTCTGGAGAAGCTTGTGGATTGGGAATACACATTTTGTGACGCAGATGCAGAGACAAAAAGATACTTTTATCGTACACCAAAAACAAGAGAACTGGACAATCTTCTAGGAGATATCTATCATAAAATTTTAGATATGGAGAGGGCGATCACAAGAGACTTGTTTTCACATATAGTTCTGTTCTCAAGCCACTTGACAAAGGTGGCAACATTTGCAGCTGAACTGGACTGCTTTCTGTCTATGGCATTGGTTGCTCGGCAGAACAACTATATCAGGCCTTTGTTGACTGAAGAGAACTTACTCGATATAAAAAATGGAAGGCATGTTCTGCAGGAAATGACTGTCGATACTTTTATTCCTAATGACACCAAGATTCTTCGTGATGGAAGAATTAATATCATCACCGGTCCTAATTTTTCTGGAAAGAGTATCTATATAAAGCAGGTGGCTTTAATTGTTTTTCTATCCCACATTGGTAGTTTCGTGCCAGCAGATGCAGCAACAGTGGGTCTGACTGATAGAATATTTTGTGCAACGGGAAGCAGGCTGATGACAGCAGAACAATCAACATTCATGATTGATCTTCATCAAATAGGAATGATGCTAAGGCACGCTACTTCACGATCTCTATGTCTGGTAGATGAATTTGGAAAAGGGACTCTCACAGAAGATGGCATTGGTCTGCTAGCTGGGACCATAAATCACTTTGTAACGTATGATGAACCACCAAAGGTCTTCATATGCACTCATCTCATGGATTTATTGCAAGGGCATTCTTTGACCAAGTCTCAGCAGATTAGCTTTCATACAATGAGTATACTGAGGCCTGACGATAATTCTACATTTCTTGAAGACATTGTATTTTTGTATAGGCTTGTTCCAGGACATGCGCATCATAGCTACGGTGTGCCACATGAAATTATAAAAAGAGCTGCACTTGTGTTGGATGCTGTAGCAAATAACAAGTGTGTTGAGCGTCTATGTAATGATAACATCACGGCACGAGATCATCAGTACAAGAATGCCATAGAGAAGTTGTTGGAATTCGATATTGACAAAGGCAATTTAAACCAATTTTTTGATGATGTATTTTCTCTATCTCTTAATTCATGA 2436 0.3912 MDDNDVEDVEAVPQVYMACILHGHRIGVSYYDSSVRQLYVLEVWDDGDKLYPVIDMVKYQANPVIIYTSSKCEESFLSALQRSDEAAEAPQVKLVKSSIFSYEQAWHRLIYLRVVGMDEGLNEKERVYYLSSMMDMGSEVQVRASGGLLAILENERIVDTLEQMESGNTSITVDSVAEISLHKFLKLDVAAHEALQIFQMDKHPSHMGIGRPKEGESVSFEMTNPLSCMQCVTPMGRRLLRNWFMRPILDLEVLNYRLNSVSFFLCSEELVVSLRDTLKSVKDIPYLLKKFDSPSSICTSSDWTALLKSICALLHLGKIFEVGISEGLREELKYLNLDIVEKASSSISTELAYVYELVIGVIDVNRTKEKGYATIVKEGFCDELDELRQIYEELPEFLQQVSSLELAQFPVIFKDKPIPCIVYIQQIGYLMCIFEEKLEETTLEKLVDWEYTFCDADAETKRYFYRTPKTRELDNLLGDIYHKILDMERAITRDLFSHIVLFSSHLTKVATFAAELDCFLSMALVARQNNYIRPLLTEENLLDIKNGRHVLQEMTVDTFIPNDTKILRDGRINIITGPNFSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTDRIFCATGSRLMTAEQSTFMIDLHQIGMMLRHATSRSLCLVDEFGKGTLTEDGIGLLAGTINHFVTYDEPPKVFICTHLMDLLQGHSLTKSQQISFHTMSILRPDDNSTFLEDIVFLYRLVPGHAHHSYGVPHEIIKRAALVLDAVANNKCVERLCNDNITARDHQYKNAIEKLLEFDIDKGNLNQFFDDVFSLSLNS 811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g00299 811 PIRSF MSH2 1 796 IPR011184 GO:0005524|GO:0006298|GO:0030983
Aip07g00299 811 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 531 757 IPR027417 -
Aip07g00299 811 Pfam MutS domain V 574 745 IPR000432 GO:0005524|GO:0006298|GO:0030983
Aip07g00299 811 ProSitePatterns DNA mismatch repair proteins mutS family signature. 650 666 IPR000432 GO:0005524|GO:0006298|GO:0030983
Aip07g00299 811 Pfam MutS family domain IV 379 480 IPR007861 GO:0005524|GO:0006298|GO:0030983
Aip07g00299 811 CDD ABC_MSH5_euk 543 744 - -
Aip07g00299 811 Gene3D - 185 414 - -
Aip07g00299 811 SMART DNAend 229 555 IPR007696 GO:0005524|GO:0006298|GO:0030983
Aip07g00299 811 SUPERFAMILY DNA repair protein MutS, domain III 230 530 IPR036187 -
Aip07g00299 811 PANTHER MUTS PROTEIN HOMOLOG 5 24 791 - -
Aip07g00299 811 Gene3D - 531 793 IPR027417 -
Aip07g00299 811 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 24 791 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
Aip07g00299 811 Pfam MutS domain III 230 523 IPR007696 GO:0005524|GO:0006298|GO:0030983
Aip07g00299 811 SMART mutATP5 570 757 IPR000432 GO:0005524|GO:0006298|GO:0030983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip07g00299 Aip-Chr7 2726998 2735695 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip07g00299 K08741 - gmx:100794332 1381.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip07g00299 07 2726998 2735695 Aip07g00299 07 2726998 2735695 ECH