Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g00259 ATGGAATTCGACCCGATCCCAATCGGTTCCTGCTCCAAAGAGAACCAGATCATCTACCAGCAGTGGTTCAATTACGCCGATTCAGATGGCGATGGCCGCATTACGGGGAGTGATGCCACCAAGTTTTTCGCCATGTCCAATTTGTCTCGCCAGGATCTTAAGCAGGTGTGGGCTATTGCGGATTCGAAGCGACAAGGATATCTTGGTTTTGCAGAGTTCATCATTGCTATGCAGCTAATTTCTTTGGCACAATCCGGCCAACCAATAACACAAGATCTTCTTTCTAGTGGTGTTGAGCTGAAAAACTTGAAACCTCCCACAATGGATGGTTTGGATGTATTAATGGCTAAGAAAAGGCATAAAGAAAAAGAAGTTGATTCAAATGGTAATTTATTCCCACTATTACTGAATATGGGTATTTGTATTCCTTTGGTTTCTATATTCCTCTTTCGTCTTGAAAATCCAGTTTCAGTAGTTAGCAATAATGCAGGTAGTTCTCCATTGCAGCCATCACCATCTTCAAGTAGTTGGTTCTCTTCGAAGTCAACAAAAAAGGTTTCACTTTCCTCCGTGACCTCAATAATTGATGGCTTGAAGAAACTCTACATCCAGAAGTTGAGGCCATTAGAAGCTACTTATCGTTTTAATGATTTTGTATCCCCATTACTGACAAATAGTGACTTTGAAGCAAAGCCAATGGTTATGCTTTTGGGTCAATACTCAACTGGTAAAACAACATTTATCAAACATCTACTTAAAAGTAGTTATCCAGGAGCCCATATTGGACCGGAGCCTACAACTGATCGGTTTGTTGTTGTCATGTCTGGACCTGACGAGAGAAGCATTCCTGGAAATACTGTTGCTGTCCAAGCAGACATGCCATTTAGTGGTCTTACAAGTTTTGGCACCGCATTTTTGTCAAAATTTGAGTGCTCTCAAATGCCTCATCCGCTACTGGACCACATTACATTTGTGGACAGTCCCGGAGTTTTATCCGGAGAAAAGCAACGAACACAACGGGCATATGATTTTACAGGTGTAACATCTTGGTTTGCTGCCAAATGTGATTTGATACTCCTCCTGTTTGATCCTCACAAGCTTGATATTAGTGATGAATTCAAGCGTGTGATCTCATCCTTGCGTGGGCATGATGACAAAATTCGAGTAGTTTTGAACAAGGCAGACCAAGTTGATACTCAACAACTAATGAGAGTTTATGGAGCATTGATGTGGTCACTTGGGAAGGTGCTGAATACACCTGAAGTCATGCGTGTGTATATCGGCTCCTTCAACGATAAACCCATAAATGATGCTGTCAGTGGTCCAATCGGTAAGGAACTCTTTGAAAAAGAACAAGAGGACCTTCTTTCAGACCTAAAAGATATACCAAAGAAGGCCTGTGATCGAAGAATCAACGAATTTGTAAAACGGGCACGAGCTGCCAAGATACATGCTTACATTATCAGTCATCTTAAAAAGGAGATGCCTGCTATGATGGGCAAAGCTAAAGCTCAGCAAAAGCTTATTGATAATCTGGCTGCAGCATTTGGAAAGGTACAAAGGGAGTTTCATCTACCTCCTGGAGACTTCCCAGATGTTGAACATTTCAGAGAGACTCTAAGTGGTTATAATTTTGACAAGTTTGAGAAATTGAAACCAAAAATGATACAGGCAGTAGATGACATGTTAGGTTATGACATTCCAAACCTCTTGAAAAATTTTAGGAATCCATATGATTAG 1740 0.4098 MEFDPIPIGSCSKENQIIYQQWFNYADSDGDGRITGSDATKFFAMSNLSRQDLKQVWAIADSKRQGYLGFAEFIIAMQLISLAQSGQPITQDLLSSGVELKNLKPPTMDGLDVLMAKKRHKEKEVDSNGNLFPLLLNMGICIPLVSIFLFRLENPVSVVSNNAGSSPLQPSPSSSSWFSSKSTKKVSLSSVTSIIDGLKKLYIQKLRPLEATYRFNDFVSPLLTNSDFEAKPMVMLLGQYSTGKTTFIKHLLKSSYPGAHIGPEPTTDRFVVVMSGPDERSIPGNTVAVQADMPFSGLTSFGTAFLSKFECSQMPHPLLDHITFVDSPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFKRVISSLRGHDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLNTPEVMRVYIGSFNDKPINDAVSGPIGKELFEKEQEDLLSDLKDIPKKACDRRINEFVKRARAAKIHAYIISHLKKEMPAMMGKAKAQQKLIDNLAAAFGKVQREFHLPPGDFPDVEHFRETLSGYNFDKFEKLKPKMIQAVDDMLGYDIPNLLKNFRNPYD 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g00259 579 SUPERFAMILY EF-hand 11 91 IPR011992 -
Aip07g00259 579 Pfam N-terminal EH-domain containing protein 197 229 IPR031692 -
Aip07g00259 579 Gene3D - 198 570 - -
Aip07g00259 579 Gene3D - 234 462 IPR027417 -
Aip07g00259 579 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 228 464 IPR030381 GO:0005525
Aip07g00259 579 SMART eh_3 8 103 IPR000261 GO:0005515
Aip07g00259 579 Pfam Dynamin family 234 393 IPR045063 -
Aip07g00259 579 CDD EHD 233 477 - -
Aip07g00259 579 Pfam Cytoskeletal-regulatory complex EF hand 26 80 IPR000261 GO:0005515
Aip07g00259 579 ProSiteProfiles EF-hand calcium-binding domain profile. 48 83 IPR002048 GO:0005509
Aip07g00259 579 PANTHER EH DOMAIN 19 134 - -
Aip07g00259 579 PANTHER EH DOMAIN 169 577 - -
Aip07g00259 579 Pfam Domain of unknown function (DUF5600) 469 570 IPR040990 -
Aip07g00259 579 CDD EH 19 85 IPR000261 GO:0005515
Aip07g00259 579 ProSiteProfiles EH domain profile. 15 104 IPR000261 GO:0005515
Aip07g00259 579 PANTHER CALCIUM-BINDING EF HAND PROTEIN 19 134 - -
Aip07g00259 579 PANTHER CALCIUM-BINDING EF HAND PROTEIN 169 577 - -
Aip07g00259 579 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 222 501 IPR027417 -
Aip07g00259 579 SMART efh_1 18 46 IPR002048 GO:0005509
Aip07g00259 579 SMART efh_1 52 80 IPR002048 GO:0005509
Aip07g00259 579 Gene3D - 10 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip07g00259 Aip-Chr7 2183793 2187921 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip07g00259 1 579 EF-hand Containing Proteins AT3G20290 78.411 0.0 917
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip07g00259 K12483 - gmx:100804468 948.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip07g00259 07 2183793 2187921 Aip07g00259 07 2183793 2187921 ECH