Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g00174 ATGGCGCGTGTTGGAGGCACAAGCGCCGTTGGCTTCGGTGGCGCCATTTTGGTGTGCGTAGCTTTTGCCTACTTCATCTCCGACCGTCGTTGGAAGAAGAAGAAACCGATAATGAAGAAAACCAGAGGAGGAGTGGTTGATGCCATTGGCAACACTCCTTTGATTCGAATCAACAGCCTCTCCGATGCTACTAACTGCCAAATTCTTGCCAAGTGCGAGTTCCTTAACCCTGGTGGCAGCGTCAAAGATCGTGTTGCTCTTCAAATTATCCAAGAGGCCTTGGAATCTGGCCAGCTAAGTCCAGGTGGAATAATCACTGAAGGGAGTGCTGGTAGCACTGCCATTAGCATCGCCACGGTTGCTCCTGCATTTGGATGCCAATGCCACGTTGTTATACCCGATGATGCTGCCATTGAGAAGTCTCAAATAATTGAAGCCCTTGGGGCAACTGTTGAAAGAGTAAGACCAGTGTCAATTACTCACAAAGATCATTTTGTCAATATTGCAAGGAGAAGGGCATCTGAAGCAAATGAGTTCGCATCAAAGCTCAGAAATTCACAATTGAATGGCAAGGACACATACCAGATAAACGGTCACAAATCCAATGGTTATGATCACAGTTCACTCTTTCCTACTGATTGTAAAGGTGGATTTTTTGCGGATCAGTTTGAGAATTTGGCGAACTTCAGAGCCCATTATGAGGGTACAGGGCCTGAGATTTGGGAACAAACCAATGGAAATTTGGATGCATTTGTTGCAGCAGCAGGCACTGGTGGCACTGTGGCTGGTATTAGCAGTTTTCTTCAGGAAAAGAATCCAGGGATCAAGTGCTTCCTTATAGATCCTCCTGGTTCCGGTTTGTATAATAAGGTAACGAGGGGAGTTATGTATACAAAAGAGGAGGCAGAAGGACGAAGACTTAAGAATCCATTTGACACCATAACAGAAGGAATCGGAATTAACAGGATAACAAGGAATTTTGCAAAGGCAAAGCTTGATGGCGCTTTTCGAGGCACAGATCTTGAGGCTGTTGAAATGGCTAGGTTCCTCTTGAAGAATGATGGGCTCTTCTTAGGAAGCTCTTCAGCAATGAATTGTGTAGGAGCAGTTAGAGTAGCGCAGGCATTGGGCCCTGGTCACACAATTGTGACAATCCTCTGTGACAGTGGAATGCGACACCTGAGCAAGTTCCACAACGACAAATACTTGTCTCAGCTCGGATTGATGCCAAAAGCAACTGGATTGGAGTTCTTGGGCATCAAATGA 1266 0.4589 MARVGGTSAVGFGGAILVCVAFAYFISDRRWKKKKPIMKKTRGGVVDAIGNTPLIRINSLSDATNCQILAKCEFLNPGGSVKDRVALQIIQEALESGQLSPGGIITEGSAGSTAISIATVAPAFGCQCHVVIPDDAAIEKSQIIEALGATVERVRPVSITHKDHFVNIARRRASEANEFASKLRNSQLNGKDTYQINGHKSNGYDHSSLFPTDCKGGFFADQFENLANFRAHYEGTGPEIWEQTNGNLDAFVAAAGTGGTVAGISSFLQEKNPGIKCFLIDPPGSGLYNKVTRGVMYTKEEAEGRRLKNPFDTITEGIGINRITRNFAKAKLDGAFRGTDLEAVEMARFLLKNDGLFLGSSSAMNCVGAVRVAQALGPGHTIVTILCDSGMRHLSKFHNDKYLSQLGLMPKATGLEFLGIK 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g00174 421 PANTHER CYSTEINE SYNTHASE-RELATED 33 420 - -
Aip07g00174 421 Pfam Pyridoxal-phosphate dependent enzyme 47 388 IPR001926 -
Aip07g00174 421 PANTHER CYSTATHIONINE BETA-SYNTHASE 33 420 - -
Aip07g00174 421 Gene3D - 230 394 IPR036052 -
Aip07g00174 421 Gene3D - 49 78 IPR036052 -
Aip07g00174 421 SUPERFAMILY Tryptophan synthase beta subunit-like PLP-dependent enzymes 40 401 IPR036052 -
Aip07g00174 421 Gene3D - 79 178 IPR036052 -
Aip07g00174 421 Gene3D - 215 229 IPR036052 -
Aip07g00174 421 CDD CBS_like 50 395 - -
Aip07g00174 421 ProSitePatterns Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 71 89 IPR001216 GO:0006535
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip07g00174 Aip-Chr7 1362382 1364716 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip07g00174 49 395 Miscellaneous Gene Families AT3G04940 29.799 8.84e-34 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip07g00174 K01738 - gmx:100799081 677.552
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip07g00174 07 1362382 1364716 Aip07g00174 07 1362382 1364716 ECH