Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g00162 ATGGCGCAAGTGCTGTACCTGCGTTTGTCTCTCCCTGCAGAACCCCGAAAATTCTCACCTTCTTCTTCTTCTTCTTCTTCCGAACCTTCACTGAAGCTTCCACAAAGAACTCGAAGCTCCAACGTATCCATTCCTGCCACCGGCAACTCATTGAGTGGTTCCAGTCGCTTGCTCAAAACCCAGAAGCTGAATTCAGAGGTTTCTCCTCACAGAGCTGTCTCAGCTGTGAGATTGATGAGGATAGAGCTTGGTGGTGCTTTTGCTGACCTTCTCAATGAGAAAGGCAAAGGTTCTGGCGAGAATGAGATGGGATATGTCCAGAGAACGCTCGGCTTTCGAACCCGGGAATTGAATCATCATGATCTTAGATTGGTTACTGACATTGTTGGCGGCACAATTCGTTGGAGAAGATATCTTGATCATCTGATCAGTTCACTTTGTCATGATAAAGATATATCTAGTATGGAACCTCTTCTCTTACAGATTCTAAGAATAGGATTCTATGAGATTGTCAAATTAGATATGCCGCCATATGCTGTTGTAGATGAGAATGTTAGGCTTGCCAAAGTTGCGCTTAGACCTGGTGCCGGCAACATGGTCAACGGAATCCTCCGAAAGCTAGTTGCACTCAAGGAAGATGAGGTTCTTCCTTTGCCCAGAGTGGAGGGTGATGATCGTGCCCAAGCCCGTGCTCTAGCAACTCTATACTCACACCCAGTTTGGATGGTAAGGAGATGGACAAAATATCTTGGCCAGGAAGAAACCATTAAATTGATGAAATGGAACAACAGTGAACCCAGTTTCAGCTTAAGAGCAAACCAGGCAAGAGGTTTTTCGAGAGATGACCTTGTGATGCAGCTTAATGCATTGAAGGTCCCATACAGTGTTTCACCACATTTGGATGAATTTGTTCGCGTCAAAACCGGATTGCAGACTGTAATTCATGCCGGATTACTCAGAAAAGGGTTATGTTCAGTTCAAGATGAAAGTGCAGGTCTGGTAGTCTCTATTGTGGATCCTCAGCCGGGTGAAACTGTGATTGATTGCTGTGCTGCTCCTGGTGGAAAGACCTTATACATGGCCTCTCGTTTATGTGGCCAAGGTTTGGTATTTGCAGTTGATGTAAATCGTGGCAGATTGAGGATTCTCAAAGAGACAGCAAAGTTGCACCAAGTAGACGGCGTTGTTACCACCGTCCACGCCGATCTTTGCGTGTTGACGGATGGTGAAGCGCTAAAGAGTAACAAAGTTTTGTTGGATGCTCCATGCTCTGGGCTCGGTGTTCTTTCGAAGAGAGCGGATTTGCGATGGAACCGGAAGCTGGAAGATATGGAAGAGCTGAAGAAATTACAGGACGAGCTCCTCGACGCGGCGGCCAAATTGGTAAAACCTGGTGGAGTATTAGTTTATAGTACATGCTCCATAGATCCTGAAGAGAATGAGGAGAGGGTAGCAGCATTTCTTCTTAGACATGCGGAATTTCGCATTGATCCTGTGGACAGATTTGTTCCACCTGATTTTGTGACGGACAGTGGTTTCTATTTTTCTAACCCGGTAAAGCATTCGCTCGATGGCTCCTTTGCTGCTCGATTGGTGCGCGCTTCCTAA 1608 0.4614 MAQVLYLRLSLPAEPRKFSPSSSSSSSEPSLKLPQRTRSSNVSIPATGNSLSGSSRLLKTQKLNSEVSPHRAVSAVRLMRIELGGAFADLLNEKGKGSGENEMGYVQRTLGFRTRELNHHDLRLVTDIVGGTIRWRRYLDHLISSLCHDKDISSMEPLLLQILRIGFYEIVKLDMPPYAVVDENVRLAKVALRPGAGNMVNGILRKLVALKEDEVLPLPRVEGDDRAQARALATLYSHPVWMVRRWTKYLGQEETIKLMKWNNSEPSFSLRANQARGFSRDDLVMQLNALKVPYSVSPHLDEFVRVKTGLQTVIHAGLLRKGLCSVQDESAGLVVSIVDPQPGETVIDCCAAPGGKTLYMASRLCGQGLVFAVDVNRGRLRILKETAKLHQVDGVVTTVHADLCVLTDGEALKSNKVLLDAPCSGLGVLSKRADLRWNRKLEDMEELKKLQDELLDAAAKLVKPGGVLVYSTCSIDPEENEERVAAFLLRHAEFRIDPVDRFVPPDFVTDSGFYFSNPVKHSLDGSFAARLVRAS 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g00162 535 PRINTS RNA (C5-cytosine) methyltransferase signature 318 332 IPR023267 GO:0001510
Aip07g00162 535 PRINTS RNA (C5-cytosine) methyltransferase signature 516 533 IPR023267 GO:0001510
Aip07g00162 535 PRINTS RNA (C5-cytosine) methyltransferase signature 465 481 IPR023267 GO:0001510
Aip07g00162 535 PRINTS RNA (C5-cytosine) methyltransferase signature 347 357 IPR023267 GO:0001510
Aip07g00162 535 PRINTS RNA (C5-cytosine) methyltransferase signature 415 427 IPR023267 GO:0001510
Aip07g00162 535 Gene3D Sun protein; domain 3 225 331 - -
Aip07g00162 535 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 258 534 IPR001678 GO:0008168
Aip07g00162 535 Gene3D Vaccinia Virus protein VP39 332 535 IPR029063 -
Aip07g00162 535 MobiDBLite consensus disorder prediction 15 53 - -
Aip07g00162 535 Gene3D - 86 218 IPR035926 -
Aip07g00162 535 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 230 533 IPR029063 -
Aip07g00162 535 CDD AdoMet_MTases 345 471 - -
Aip07g00162 535 PANTHER NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 48 534 IPR023267 GO:0001510
Aip07g00162 535 TIGRFAM rsmB: 16S rRNA (cytosine(967)-C(5))-methyltransferase 112 533 IPR004573 GO:0006364|GO:0008649
Aip07g00162 535 MobiDBLite consensus disorder prediction 16 53 - -
Aip07g00162 535 PRINTS Viridiplantae FMU-related RCMT signature 215 228 IPR023268 -
Aip07g00162 535 PRINTS Viridiplantae FMU-related RCMT signature 100 116 IPR023268 -
Aip07g00162 535 PRINTS Viridiplantae FMU-related RCMT signature 492 504 IPR023268 -
Aip07g00162 535 PRINTS Viridiplantae FMU-related RCMT signature 76 99 IPR023268 -
Aip07g00162 535 Coils Coil 440 460 - -
Aip07g00162 535 Pfam 16S rRNA methyltransferase RsmB/F 337 531 IPR001678 GO:0008168
Aip07g00162 535 SUPERFAMILY NusB-like 107 242 IPR035926 -
Aip07g00162 535 PANTHER NOL1/NOP2/SUN FAMILY PROTEIN / ANTITERMINATION NUSB DOMAIN-CONTAINING PROTEIN 48 534 - -
Aip07g00162 535 Pfam NusB family 102 208 IPR006027 GO:0003723|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip07g00162 Aip-Chr7 1284455 1291444 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip07g00162 K03500 - gmx:100779327 886.715
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip07g00162 07 1284455 1291444 Aip07g00162 07 1284455 1291444 ECH