Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g00161 ATGTCGCAGGAAAAGGGTCAGCCACTACCTAAGTTTGGTGAATGGGATGTTAATGATCCAGCTTCAGCGGAAGGGTACACTGTAATCTTTAACAAAGCTAGGGATGAGAAGAAGACTGGTGGCAAACCTGAGTCACCCGGAAAAGCTGATCCTCATACTGCCAAGCCTGCATTAGATCCCGGCAAAACTGCGAGTAAGAAATGGTTTTGCTGCATACAAAATCCTCCTGCAGAATCATAG 240 0.4625 MSQEKGQPLPKFGEWDVNDPASAEGYTVIFNKARDEKKTGGKPESPGKADPHTAKPALDPGKTASKKWFCCIQNPPAES 79
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g00161 79 Pfam Cleavage site for pathogenic type III effector avirulence factor Avr 4 39 IPR008700 -
Aip07g00161 79 PANTHER RIN4, PATHOGENIC TYPE III EFFECTOR AVIRULENCE FACTOR AVR CLEAVAGE SITE-RELATED 1 68 - -
Aip07g00161 79 MobiDBLite consensus disorder prediction 30 49 - -
Aip07g00161 79 MobiDBLite consensus disorder prediction 30 66 - -
Aip07g00161 79 PANTHER RPM1-INTERACTING PROTEIN 4 (RIN4) FAMILY PROTEIN 1 68 IPR040387 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip07g00161 Aip-Chr7 1278226 1280096 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip07g00161 - - gmx:100305826 139.043
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip07g00161 07 1278226 1280096 Aip07g00161 07 1278226 1280096 ECH