Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g03736 ATGTTCAACCACCCTTGTTTTTCTTGCTATCTATGTGAACGTGATCACTGCCTTCATCATCATCGTTATCATGCTTTTGAGGGGCAAAACCAGATACCCTTTTACAAGAATCATCGGGTTATTGATATTGATACCCTTCAGCTTCAAGAGGCTTTTTCTCGTGTTTCATTAACACCCCACAATAATAATCCTGATTTTTCTGGTCAACGGTCAACCTTCGATGAAGAAGAAGAAGGGTACGAATACAAGTACCCTTTTGTTTCTCCTAATCCTTCATCCTATTTGGTGCCTCCATCGATGCAACATTCTAACACAGTTCCAATGAATGAGTCTTTGATGATCAATGCTAATAATAGCAGAAGAAATGTTCATCGGAATTTCAATGGTACTAGGAGTCCACAGAGTTATTGGTCTCAGCGTCCTTGTTCGTCCGTGAATTATTTGAGGGGGAAGATTCTGGATTTGGCTAAGACTCAATGTGGATGCAGGGTTTTGCAGGACACCATGAAAGGGTTAACATCAAAGGAAGAGGTTTTTGTTTTTTTCCAAGAGCTTGTTGATCATAATGTGATTGAGTTGATGGGGCACTCTTTTGGGAACTACGTTTTTCAGAAGTTGGTTGAGATTTGCAGTGAGGAACAAATCACTACCATTGTTTTCAATGCGACTAAGAATGTCCTTAAGTTTGTGAATCTTTGCCTTGACATTCATGGTACTAGGTCTGTTCAGAAGTTATTGGAGCATGTAACAAACCAAGAACAAAGATTATGTATAATGTCGGCGCTGACACCAAGTGTTGTTGCTTTGTCTACTAACACGAATGGTCTTCATGTGGTTGATCACTGTGTCAAGCATTTCTCAAGTGAAGATACTAAGTATATGCTGAACATTGTAGCAACCAACTGTTTCAAGATTGCAACAGATAAAAGTGGTTGCTGTGTAATTCAGCAATTTGTTGACCATGCTCCCGGTGAATCCAAAGATTTATTGATGGCTGGGATCATACTAAATGCTCCACTCCTCGCCGAAAACTGTTATGGGAACTATGTGGTGCAACATTTAGTGTCACTGAAAATAGCAAGAGTGACAAAGAGTCTGATGAAACAGCTAGAAGGCAAGTTTGTGTCAATGTCATGCAACAAGTATGGTAGCAATGTTGTGGAGAAGTTCTTCCAAGATTCAGGGGAAAGCCATTCAAGGAGCATTATCTTAGAGTTGCTACATTATCCAAATGTCTCAATGCTTCTTGTGGATCCATATGCTAATTTTGTCATCAGTTCTGCAGTCATAGTTTCCAAGGGTGGCACACAAGAGGAACTGCTTAAGGTGATTAAACAACATTCTCCAATGATGCGTAGCAACCATTATGGCAAGAAACTACTTGTTTTGGCAAGTATCCAATATGGGTATTATGGTAATTCTCGCTTGGTTCTTGGTCCGAGTTCATCGCGTTTGATGAAGACAAGTTCAGTTCTTGTGGAGAAAATTGAAGTGAGAAATGATCACAACAATCTTGTTCTTTATGCCTTTAATGAGAAGCCTGAGTTAATTTCCCAAACAAATTGGACCACTTCAAGATTCTTAGTTGTTCCCAGAAATACTCGCAAGGGATTTTCTTTGTGGTTAAATAAGGGTTCTAGAATTCGTATGAGGTGGGAAGCACAAGCAAGTAGCAGGAATCAGCTTGAAGGGATGGTGATTAAAGGAGAAAGGAGATTTGAAAAAATGGTGCCTCAACAAACATTCTCCCTTGATACACTTGCCATTCGTGAGACAATCAATGGTAATGAGGCTGAATACATGATTGAGGAAGATGATAGGTACCAAATTGGAGTTCTAAACATGAATGACAAGAACATAGTATTAAACTTGAATGTTAATGTCTCTGCCAAGATTTATGATACCACCAAAGCCAACAACATCTACTCTTCTATCAATGGATCATGCACATTTAGCCTCCTCTTCCCCAACACATATTATCTCATTCTAACTGCACCAAAAAATGTAAGATTTTACTTGCCCTGTTTTAAATTTGTAGGACTTTGTATAATTGTTATCTTCATGATACTGAGATGCCTTGGAGGTTATGATAATCAAAATGATAATGATAATCACAATAGTAATGTTACAATTGACACAAGCAACAACAATAATAATGTATTAGTTTCTTCATCACAAGAAATTACTGAACCAATGATGCATCATCATCATGTGAAGCCAAATCCAAAAAATGATGAAGAAGAAGAATCATCAGAAGATGGTTCTAGTTGCTCCTCAGAGGAATTATATGATGAGAAATTGTGTGTCATTTGCTATGATGAACAAAGAAATTGCTTCTTTGTTCCTTGTGGCCACTCTGCCACTTGCTTTCCCTGTGCAAAGAGGATTGTGGATGGAGAGAGCAAAGTGTGCCCTGTGTGCAGAAGGCTCATTCACAAAGTGCGAAGATTATTTATGAGTTAG 2463 0.3861 MFNHPCFSCYLCERDHCLHHHRYHAFEGQNQIPFYKNHRVIDIDTLQLQEAFSRVSLTPHNNNPDFSGQRSTFDEEEEGYEYKYPFVSPNPSSYLVPPSMQHSNTVPMNESLMINANNSRRNVHRNFNGTRSPQSYWSQRPCSSVNYLRGKILDLAKTQCGCRVLQDTMKGLTSKEEVFVFFQELVDHNVIELMGHSFGNYVFQKLVEICSEEQITTIVFNATKNVLKFVNLCLDIHGTRSVQKLLEHVTNQEQRLCIMSALTPSVVALSTNTNGLHVVDHCVKHFSSEDTKYMLNIVATNCFKIATDKSGCCVIQQFVDHAPGESKDLLMAGIILNAPLLAENCYGNYVVQHLVSLKIARVTKSLMKQLEGKFVSMSCNKYGSNVVEKFFQDSGESHSRSIILELLHYPNVSMLLVDPYANFVISSAVIVSKGGTQEELLKVIKQHSPMMRSNHYGKKLLVLASIQYGYYGNSRLVLGPSSSRLMKTSSVLVEKIEVRNDHNNLVLYAFNEKPELISQTNWTTSRFLVVPRNTRKGFSLWLNKGSRIRMRWEAQASSRNQLEGMVIKGERRFEKMVPQQTFSLDTLAIRETINGNEAEYMIEEDDRYQIGVLNMNDKNIVLNLNVNVSAKIYDTTKANNIYSSINGSCTFSLLFPNTYYLILTAPKNVRFYLPCFKFVGLCIIVIFMILRCLGGYDNQNDNDNHNSNVTIDTSNNNNNVLVSSSQEITEPMMHHHHVKPNPKNDEEEESSEDGSSCSSEELYDEKLCVICYDEQRNCFFVPCGHSATCFPCAKRIVDGESKVCPVCRRLIHKVRRLFMS 820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g03736 820 ProSiteProfiles Pumilio RNA-binding repeat profile. 224 260 IPR001313 GO:0003723
Aip06g03736 820 SMART ring_2 768 807 IPR001841 -
Aip06g03736 820 Pfam Domain of unknown function (DUF4793) 598 668 IPR032010 -
Aip06g03736 820 Pfam Zinc finger, C3HC4 type (RING finger) 765 814 - -
Aip06g03736 820 Gene3D - 136 467 IPR011989 -
Aip06g03736 820 PANTHER PUMILIO HOMOLOG 15 60 461 - -
Aip06g03736 820 Pfam Domain of unknown function (DUF4792) 504 573 IPR032008 -
Aip06g03736 820 SMART pum_5 224 260 IPR001313 GO:0003723
Aip06g03736 820 SMART pum_5 297 332 IPR001313 GO:0003723
Aip06g03736 820 SMART pum_5 261 296 IPR001313 GO:0003723
Aip06g03736 820 SMART pum_5 333 368 IPR001313 GO:0003723
Aip06g03736 820 SMART pum_5 147 183 IPR001313 GO:0003723
Aip06g03736 820 SMART pum_5 369 405 IPR001313 GO:0003723
Aip06g03736 820 SMART pum_5 185 220 IPR001313 GO:0003723
Aip06g03736 820 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 60 461 - -
Aip06g03736 820 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 741 820 IPR013083 -
Aip06g03736 820 ProSiteProfiles Pumilio RNA-binding repeat profile. 184 221 IPR001313 GO:0003723
Aip06g03736 820 SUPERFAMILY RING/U-box 762 814 - -
Aip06g03736 820 Pfam Pumilio-family RNA binding repeat 341 354 IPR001313 GO:0003723
Aip06g03736 820 Pfam Pumilio-family RNA binding repeat 301 335 IPR001313 GO:0003723
Aip06g03736 820 Pfam Pumilio-family RNA binding repeat 374 407 IPR001313 GO:0003723
Aip06g03736 820 Pfam Pumilio-family RNA binding repeat 266 295 IPR001313 GO:0003723
Aip06g03736 820 Pfam Pumilio-family RNA binding repeat 229 262 IPR001313 GO:0003723
Aip06g03736 820 Pfam Pumilio-family RNA binding repeat 152 166 IPR001313 GO:0003723
Aip06g03736 820 Pfam Pumilio-family RNA binding repeat 189 219 IPR001313 GO:0003723
Aip06g03736 820 SUPERFAMILY ARM repeat 144 461 IPR016024 -
Aip06g03736 820 ProSiteProfiles Pumilio RNA-binding repeat profile. 369 405 IPR001313 GO:0003723
Aip06g03736 820 ProSiteProfiles Pumilio RNA-binding repeat profile. 296 332 IPR001313 GO:0003723
Aip06g03736 820 MobiDBLite consensus disorder prediction 734 758 - -
Aip06g03736 820 CDD Pumilio 142 461 IPR033712 GO:0003723
Aip06g03736 820 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 122 468 IPR033133 GO:0003723
Aip06g03736 820 ProSiteProfiles Zinc finger RING-type profile. 768 808 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g03736 Aip-Chr6 134939944 134948536 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g03736 - - adu:110272902 850.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g03736 06 134939944 134948536 Aip06g03736 06 134939944 134948536 ECH