Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g03619 ATGGCGCTCATGAACCGAACCGCCACACGCCTCCCTCAACTCCTCTCACCACACCGCGCACTCTCTCTGCACACCACCCTCCCATCTCTCTACGCCGCCACCAACACCACCACCCCAGCCTCCTACCCCCGCCCGTCACCGCCATCGACCTCAAGCCCGCCGGGAATCTCGAAGACGGCGGAGTTCGTGATCTCGAAGGTGGATGACCTCATGAACTGGGCCCGGAGGGGATCGATCTGGCCGATGACGTTCGGACTGGCGTGCTGCGCTGTTGAGATGATGCACACCGGTGCCTCCAGATACGATCTTGATAGGTTTGGGATTATCTTCAGGCCAAGTCCTCGCCAATCTGATTGTATGATTGTTGCTGGAACTCTCACCAACAAGATGGCACCCGCTCTTCGCAAGGTTTATGACCAAATGCCTGAGCCTAGGTGGGTGATCTCTATGGGAAGCTGTGCCAACGGAGGTGGTTACTATCACTATTCCTACTCTGTTGTTCGCGGATGCGACAGGATTGTTCCTGTCGACATATATGTCCCAGGTTGCCCTCCAACTGCCGAAGCTCTACTCTATGGACTCCTCCAGCTGCAGAAGAAGATCAACAGGCGCAAGGACTTCCTCCTGTGGTGGACAAAACTTATGAAATATGCAATCTTTCTGCCCTTTTTTCCTGAAGCTGCAAATGGAACCCAGTCACGTCACGCATCAGCTGCAGCTAAATCTCGAGTAGCACCACAAGAGCTGCTTCGATATTTCGAGTCTCTAGGGTTTCTCTTTCTTCTTCTTCTTCTTCCTCTTTTCTCTAATGGCGGAAGAATCGCAGTACGAAACCACAACCACTCCTCCTTCGTTGAAACGCAAGTACGACGACCAACCACCGCCGTCCTCGGGCCGCGTCACCGGATTCTCCGATGGCCCGCCTCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTCTGGCATCGAGCTCGCCAAGCTCCGGGCACAGGAGGTCGCCGCCCGCCTCCTCAGCGGCGCCCCTCCACCCGCTGCCGCCGGAGCTCTCGACGCCAAGCGTCCAAAGGTCGATAACGGCGCTGCTCCTCACTCCGGTTTCGATTCCGTTGCTGATGTGAAGTCTCAGTACTCGGCACCTTCGATTTCTCCATCTTCGGTTTCTTATGGGCATCAGGGTGCAAGCAAGAAGATTGATATCCCCAATGGAAGGGTTGGTGTTATTATTGGCAAGGGTGGTGAGACCATCAAGTACCTTCAGCTCCAATCTGGGGCGAAAATTCAGGTTACCCGTGATATGGATGCTGACCCCAATTCAACCACCAGGACAGTTGAGCTTATGGGTACTCCTGAAGCAATTTCTGCTGCTGAGAGGCTTATCAATGAAGTTCTTGCAGAGGCTGAAGCTGGAGGTTCTGGCATTGTAGCTCGACGAGTATCTGGGCAAGCTGGGTCTGATGAATTTTCCATGAAGATCCCAAATAATAAGGTTGGTCTTGTTATTGGTAAAGGTGGGGAAACAATAAAGAATATGCAAGCTTCCACTGGAGCTAGAATACAGGTGATTCCTCTTCATCTTCCCCCAGGTGACACATCCACGGAAAGAACAGTAAAAATTGAAGGGAACCCTGAACAAATTGAGTCTGCAAAGCAATTGGTTAATCAAGTTATCAGTGGCGAGAATCGTCTTAGAAATCCATCAATGTCTGGTGGTTATTCTCAGCAAGGTTATCAAGCCCGGCCACCATCTAGCTGGGCTCCTCCTGGTGCTCCAATGCAACAACCTGGTTATGGCTACGTTCAGCCTGGAGGCTACTCTGGTCAATCGCAGCAGTATCCACCTTATGCAGGCTATCCTCCCACTTCAGCTGGTGGATACTCCACCAATTGGGACCAATCTGCTGCACCACCACCCCAGCAGTCTACTCATGGTGCTGGGTATGATTACTATGGTCAGCAGCAGCAAAACCCTGGAGGTGCACCTCCTGCTGATGGCAGTGCTTACAATTATAGTCAACCACCTTCCTCTGGTTATAGCCAACCTGGACATGGCTACGGTCACGATGGGTATGGTGGGTATCAGGCACCGCCGCAATCAGGGTATGGGCAGCCACCATCATATGATCAACAGCAAGGTTATGGCTCGGCCCCTAGCTATGGCAGTGGAAGCAACACAGCACAAGAGGGCCATGCTCCTAATTATGGATCACATGGTGATTCAACCCAAGTTCCACCTGGGCAACCCCCTTCAACCACTCAGCAAGGTTATGGTTCTGGCCAACAGCCAAGTCCAAATGCTGCCAACTATCCTCCACAAGGTACTGCTCAGCCCGGTTATGGGGCTCCCCCAACCTCCCAAGCTGCCTATGGCAATCCGCCCCAAGCAGGTTATGGAGGTGGTTATGGTCCCCCACAATCACAAAAGCCAGGCAGCACTCCACCTGTTTATGGACAGTCACAGTCACCCAATACGGCTGCAGGCTATGGTCAGTCTGGCCATGTGCAATCAGGGTATCCCCCTGCCCAGCCTCCGCCTTCTGGATATGGCCAACAAGAACCGGGTTCTCAAAGGGCTCCACCATCTGGTTATGGTGGTGCCCAACCAGGGTATGGTGCCCCATCATATGGTGCTCCGGGTGGTCAACCTGGGTATGGTCAAGCTCCACCATCATACAACAGTTCTTACGGTGCTGGTTACACTCAGCCTCCAGCATATTCTGGTGATGGAGCAGCAGCACAAACTGCTCAGCAGGGTAGTGTTCCAAAATCTTCACCGCAGAGTTGA 2898 0.5055 MALMNRTATRLPQLLSPHRALSLHTTLPSLYAATNTTTPASYPRPSPPSTSSPPGISKTAEFVISKVDDLMNWARRGSIWPMTFGLACCAVEMMHTGASRYDLDRFGIIFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKINRRKDFLLWWTKLMKYAIFLPFFPEAANGTQSRHASAAAKSRVAPQELLRYFESLGFLFLLLLLPLFSNGGRIAVRNHNHSSFVETQVRRPTTAVLGPRHRILRWPASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGIELAKLRAQEVAARLLSGAPPPAAAGALDAKRPKVDNGAAPHSGFDSVADVKSQYSAPSISPSSVSYGHQGASKKIDIPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRDMDADPNSTTRTVELMGTPEAISAAERLINEVLAEAEAGGSGIVARRVSGQAGSDEFSMKIPNNKVGLVIGKGGETIKNMQASTGARIQVIPLHLPPGDTSTERTVKIEGNPEQIESAKQLVNQVISGENRLRNPSMSGGYSQQGYQARPPSSWAPPGAPMQQPGYGYVQPGGYSGQSQQYPPYAGYPPTSAGGYSTNWDQSAAPPPQQSTHGAGYDYYGQQQQNPGGAPPADGSAYNYSQPPSSGYSQPGHGYGHDGYGGYQAPPQSGYGQPPSYDQQQGYGSAPSYGSGSNTAQEGHAPNYGSHGDSTQVPPGQPPSTTQQGYGSGQQPSPNAANYPPQGTAQPGYGAPPTSQAAYGNPPQAGYGGGYGPPQSQKPGSTPPVYGQSQSPNTAAGYGQSGHVQSGYPPAQPPPSGYGQQEPGSQRAPPSGYGGAQPGYGAPSYGAPGGQPGYGQAPPSYNSSYGAGYTQPPAYSGDGAAAQTAQQGSVPKSSPQS 965
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g03619 965 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 431 508 IPR036612 GO:0003723
Aip06g03619 965 MobiDBLite consensus disorder prediction 737 810 - -
Aip06g03619 965 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 526 598 IPR036612 GO:0003723
Aip06g03619 965 MobiDBLite consensus disorder prediction 595 965 - -
Aip06g03619 965 MobiDBLite consensus disorder prediction 948 965 - -
Aip06g03619 965 TIGRFAM nuoB_fam: NADH-quinone oxidoreductase, B subunit 62 203 IPR006138 GO:0008137|GO:0048038|GO:0051539
Aip06g03619 965 MobiDBLite consensus disorder prediction 924 938 - -
Aip06g03619 965 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 375 957 - -
Aip06g03619 965 Pfam NADH ubiquinone oxidoreductase, 20 Kd subunit 88 197 IPR006137 GO:0051536
Aip06g03619 965 MobiDBLite consensus disorder prediction 595 619 - -
Aip06g03619 965 MobiDBLite consensus disorder prediction 641 698 - -
Aip06g03619 965 ProSitePatterns Respiratory-chain NADH dehydrogenase 20 Kd subunit signature. 169 185 IPR006138 GO:0008137|GO:0048038|GO:0051539
Aip06g03619 965 MobiDBLite consensus disorder prediction 35 57 - -
Aip06g03619 965 MobiDBLite consensus disorder prediction 382 406 - -
Aip06g03619 965 CDD KH-I 433 498 - -
Aip06g03619 965 ProSiteProfiles Type-1 KH domain profile. 431 498 - -
Aip06g03619 965 PANTHER K DOMAIN-CONTAINING PROTEIN-RELATED 375 957 - -
Aip06g03619 965 Gene3D K Homology domain, type 1 426 519 IPR036612 GO:0003723
Aip06g03619 965 Gene3D K Homology domain, type 1 520 621 IPR036612 GO:0003723
Aip06g03619 965 Hamap NAD(P)H-quinone oxidoreductase subunit K, chloroplastic [ndhK]. 54 202 IPR006138 GO:0008137|GO:0048038|GO:0051539
Aip06g03619 965 SUPERFAMILY HydA/Nqo6-like 61 206 - -
Aip06g03619 965 CDD KH-I 525 591 - -
Aip06g03619 965 Pfam KH domain 435 500 IPR004088 GO:0003723
Aip06g03619 965 Pfam KH domain 527 592 IPR004088 GO:0003723
Aip06g03619 965 Gene3D - 59 213 - -
Aip06g03619 965 MobiDBLite consensus disorder prediction 849 875 - -
Aip06g03619 965 ProSiteProfiles Type-1 KH domain profile. 523 591 - -
Aip06g03619 965 SMART kh_6 522 596 IPR004087 GO:0003676
Aip06g03619 965 SMART kh_6 430 503 IPR004087 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g03619 Aip-Chr6 133594887 133606328 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g03619 K13210 - gmx:100813135 745.347
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g03619 06 133594887 133606328 Aip06g03619 06 133594887 133606328 ECH