Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g03612 ATGGCGGTTTCGGAGGAAGAGTGTTCTTCCGCGAAGCCAGGACCGTCTTCGTATCCCTCCACGAAGCCCTACTATCTCTCTAAGTGCGTTCTCAGAGGCAGTGCCGTTCTTCAGGTTCTTTATGGTCACATCCGTTCACCTTCATCGAACGACGTAGTTTTCGGCAAGGAGACATCAATAGAATTGGTGGTCATTGGTGTGGATGGGATTGTACAATCAGTGTGTGATCAACCTGTTTTTGGCATAATCAAAGATCTTGCAATATTGCCATGGAATGCCAAATTCCAAATGCGGGATCCACAGATGTGGGGTAAAGATCTTTTGATTGCTTTATCCGATTCTGGGAAGCTTTCATTCCTCACATTTTGCAATGAAATGCACAGATTTTTCCCTGTAACACATGTTCATCTATCTAGTCCTGGAAACACAAGGGATCTCCCTGGAAGATTGCTAGCAGTTGATTCTAGTGGTTGTTTTGTTGCTGCCAGTGCATATGAAGATCGGTTGGCTCTATTTTCTGTGTCAGGGATTGGCAATGATATTGTTGATGAGAGGATAATGTATCCTACTGAAAGTGAAGGGACTGCAAGTATTTCTACAAGTAATCACAGAAGCACTTTAAGTGGTACTATTTGGAGCATGTGCTTTATTTCACAAGATTCCAAGCAAGCAAACAAGGAGCATAATCCTATACTAGCTGTTGTTCTAAATAGGAGGGGAAAACCTCAAAATGATTTGATACTGTTGGAATGGAATATTAAAGCATGTACAATCTCTGTCATTTCTCAGTTTGTTGAAGCTGAAGCTGGGTTTCTAGCACTTAACATTGTTGAAGTTCCTAACTCTCATGGACTTGCATTTCTATTCAGAGAAGGTGATGCTCTTTTGATGGATTTAAGAGACGCTTGCAACCCATGTTGCGTCTATAGGACTAACTTAAACTTTTTACCCAATGCCATGGAGGAGCAGACTTATATTGAGGACTCTTGTAAATTACAAGATGTTGACGATGAACGCTTTAATGTTGCTGCCTGTGCTTTGTTGGAGCTGAGTGATTATGATCCTATGTGCATAGACAATGACAGTGCCGGTACTAATCCAAGTTTCAAGTATGTATGCTCATGGAGTTGGGAACCTGAAAATAATAAAGATCCTAGGATGATCTTGTCTGTAAATACTGGAGAATTTTTTATGATTGAAATTCTTTTTGAATCTGATGGCCTTAAAGTTAGTATCTCTGAGTGTCTTTATAAAGGTATGCCTTGTAAAGCACTTTTGTGGGTTAAAGGTGGATATATAGCTGCCTTTATAGAAATGGGAGATGGCATGGTTCTGAAATTGGAAGATGGAAGGCTATGCTATACAAACCCTATTCAAAATATTACACCTATACTGGACATGGCAGTTGTGGATTATCATGATGAGAAACATGATCAAGTGTTTGCCTGCAGTGGTGAGGCACCTGAGGGGTCGTTAAGGATAATTCGGAGTGGTATCAGTGTAGACAAGCTAATTAGGACTGCTCCCATATATCAAGGGGTCTATGGTGCTTGGACTGTTCGAATGAAAATTACTGATTCATATCATTCTTTTCTAGTGCTATCATTTGTTGAGCAGACAAGAATATTGTCAGTTGGATTAAGTTTTACAGACGTGACTGATTCAGTTGGTTTCCAACCTAATGTATGTACCTTGGCATGTGGCCTTTTTAGTGATGGTCTGCTTGTCCAGATCCACAAATCTACTGTTAGGCTTTGTTTGCCTACCAAGGGTGCTCATGCTGAAGGTATATCCATGTCCTCTCCTATTTGCACATCTTGGTCTCCAGATAACATGACCATCAATTTGGGGGCAGTTGGGCACAATTTGATAGTTGTGTCAACCTCTAACCCATGCTTCTTGTTTATTCTAGGGGTAAGGTTGCTATCAGATTATCATTATGAAATTTATGAAATGCATCATTTAGGACTGCAGAATGAATTGTCATGCATTTCCATCCCTAGACAAAAAACTGAGCAGAAACAACCAATTTCATCTTCTTCTGCAAATAATAGAAGTACTTCTTCCCTTGTTAGTGGAGTTGACATCAATAAAACCTTTGTTATTGGCACACACAAGCCATCTGTTGAAATTTTGTCTTGTGCTCCTGATGGAGTTACGGTGGTTGCTTGTGGGACAATTTCATTAACAAATACAATGGGGACTACCTTAAGTGGCTGTGTACCTGAAGCTGTGCAGCTTGTATTTGTTGACAAGTATTATGTTCTTGCTGGATTGAGGAATGGAATGCTTCTTCGCTTTGAGTGGCCAACAAGATCATCTTCAATACCATTGACTCTGGTTAATGCTGATTTATGTTCCACAAATTTGGTGAATTCTGTGGCCAATGCTTTTGACAAGAGAAATGACCTGCCTTCCGTGCTTCAGTTGATTGCCATTCGTCGTATTGGTGTTACTCCAGTTTTCTTGGTGCCCTTGGATGACTCGCTTGATGCTGATATAATTGTTCTATGTGAGAGACCTTGGTTGTTGCATAGCGCAAGACACAGCCTTTCCTATACTTCTATTTCATTTCAGCCATCCACACATGTTACTCCTGTTTGCTCCATCGAGTTTCCTAAAGGAATACTATTTGTTGCAGAAAACAGTTTACATCTTGTGGAGATGATGCACAGTAAGAGACTTAATGCACAGAAGTTTCATTTAGAAGGCACTCTACGCAAGATCCTGTATCACAATGAAAGCAGGATGTTGCTTGTGTTGAGGACTGGACTGAATTATGGTACATGCTCGTCTGACATATGTTTTGTGGATCCCACAAGTGGGACAGTGCATTCATCTTTTAGACTCGAACCTGGAGAAACAGGAAAATCCATGGAAGTAGTAAGGGTTGGAAGTGAGCAGGCTCTTGTAGTTGGAACTAGTCTGTCTTCTGGTCCGGCCATAATGCCCAGTGGGGAAGCTGAGAGTGCTAGGGGTCGCCTTCTTGTTCTTTGCCTTGATCATGTGCAAAATTCAGATAGTGGTTCAATGACATTATGTTCAAAGGCAGGATCATCATCTCTACGAACTTCACCATTTCATGAAACTGTTACATATGCTCCCGAACAGTTATCAGGCAGCAGTCTTGGCAGCAGCCCCGATGATAATAGTTCCGATGGGATCAAACTAGATGAAAATGAAGTATGGCAGTTCCGGTTTGCTTATGGCAATACATGGCAGGGAATGGTGCTTGCAATCTGTCCTTATCTTGATCGTTACTTCCTGGCATCAGCTGGCAATACTTTTTATGTTTGTGGTTTCCCAAATGACAATCCCCAAAGAGTGAGAAAGTTTGCGCAGGGAAGGACACGTTTCTTGGTAACATCATTGACTGTACATTTCACTAGAATCGCTGTTGGTGATTGTCGTGATGGTGTCCTTTTCTATTCCTACCACGAGGATACAAAAAAATTGGAGCAACTTTACTCTGACCCATCGCTGAGGTTAGTTGCTGATTGCATTCTTATGGATGCTGAAACGGCTGTCGTTTCGGATCGTAAAGGAAGCATTGCTGTTTTATGTTCAGATCATTTGGAAGATAATGCAAGTCCAGAATGCAATTTGTCACTAAATTGTGCTTATTTCATGGGTGAAATAGCCATGAGCATTCAGAAGGGTTCATATTCATACCGTCTTCCAGCTGATGATGCTCTGCAAGGAGCCAATTGGCCCAAGACAAACATTGATTCACTACAAAATACAATTATTGCTAGTACTCTGTTAGGAAGCATCATGATCTTCATCCCTTTATCAAGGGAAGAATATGAGCTCTTAGAAGCAGTGCAAACAAGACTTGCTGTACATCATTTGACTGCACCTATTCTTGGGAACGATCATAATGAGTTTCGCAGCCGTGAAAATCCAGCCGGAACACCCAAAATACTTGACGGTGATATGTTGACTCAGTTTCTGGAGTTGACAAGCATGCAACAACAGATCATTTTATCATCCGACCCACCGGAAATGGTAAAATCAAGTTTGAACCCGGTCCTCTTTTCCCCTAACAACGTACCAACATGTGAGGAGGAGCTATTAACCCGTGGCTGCAAGATCCCACAATTAGCGGTGTAG 4113 0.4143 MAVSEEECSSAKPGPSSYPSTKPYYLSKCVLRGSAVLQVLYGHIRSPSSNDVVFGKETSIELVVIGVDGIVQSVCDQPVFGIIKDLAILPWNAKFQMRDPQMWGKDLLIALSDSGKLSFLTFCNEMHRFFPVTHVHLSSPGNTRDLPGRLLAVDSSGCFVAASAYEDRLALFSVSGIGNDIVDERIMYPTESEGTASISTSNHRSTLSGTIWSMCFISQDSKQANKEHNPILAVVLNRRGKPQNDLILLEWNIKACTISVISQFVEAEAGFLALNIVEVPNSHGLAFLFREGDALLMDLRDACNPCCVYRTNLNFLPNAMEEQTYIEDSCKLQDVDDERFNVAACALLELSDYDPMCIDNDSAGTNPSFKYVCSWSWEPENNKDPRMILSVNTGEFFMIEILFESDGLKVSISECLYKGMPCKALLWVKGGYIAAFIEMGDGMVLKLEDGRLCYTNPIQNITPILDMAVVDYHDEKHDQVFACSGEAPEGSLRIIRSGISVDKLIRTAPIYQGVYGAWTVRMKITDSYHSFLVLSFVEQTRILSVGLSFTDVTDSVGFQPNVCTLACGLFSDGLLVQIHKSTVRLCLPTKGAHAEGISMSSPICTSWSPDNMTINLGAVGHNLIVVSTSNPCFLFILGVRLLSDYHYEIYEMHHLGLQNELSCISIPRQKTEQKQPISSSSANNRSTSSLVSGVDINKTFVIGTHKPSVEILSCAPDGVTVVACGTISLTNTMGTTLSGCVPEAVQLVFVDKYYVLAGLRNGMLLRFEWPTRSSSIPLTLVNADLCSTNLVNSVANAFDKRNDLPSVLQLIAIRRIGVTPVFLVPLDDSLDADIIVLCERPWLLHSARHSLSYTSISFQPSTHVTPVCSIEFPKGILFVAENSLHLVEMMHSKRLNAQKFHLEGTLRKILYHNESRMLLVLRTGLNYGTCSSDICFVDPTSGTVHSSFRLEPGETGKSMEVVRVGSEQALVVGTSLSSGPAIMPSGEAESARGRLLVLCLDHVQNSDSGSMTLCSKAGSSSLRTSPFHETVTYAPEQLSGSSLGSSPDDNSSDGIKLDENEVWQFRFAYGNTWQGMVLAICPYLDRYFLASAGNTFYVCGFPNDNPQRVRKFAQGRTRFLVTSLTVHFTRIAVGDCRDGVLFYSYHEDTKKLEQLYSDPSLRLVADCILMDAETAVVSDRKGSIAVLCSDHLEDNASPECNLSLNCAYFMGEIAMSIQKGSYSYRLPADDALQGANWPKTNIDSLQNTIIASTLLGSIMIFIPLSREEYELLEAVQTRLAVHHLTAPILGNDHNEFRSRENPAGTPKILDGDMLTQFLELTSMQQQIILSSDPPEMVKSSLNPVLFSPNNVPTCEEELLTRGCKIPQLAV 1370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g03612 1370 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR (CPSF) A SUBUNIT PROTEIN 19 1339 - -
Aip06g03612 1370 Gene3D - 35 461 IPR015943 GO:0005515
Aip06g03612 1370 Pfam CPSF A subunit region 1065 1319 IPR004871 GO:0003676|GO:0005634
Aip06g03612 1370 PANTHER DNA REPAIR/RNA PROCESSING CPSF FAMILY 19 1339 - -
Aip06g03612 1370 Pfam Mono-functional DNA-alkylating methyl methanesulfonate N-term 106 666 IPR018846 -
Aip06g03612 1370 Gene3D - 499 894 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g03612 Aip-Chr6 133526261 133537519 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g03612 K12830 - gmx:100806799 2131.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g03612 06 133526261 133537519 Aip06g03612 06 133526261 133537519 ECH