LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aip06g03592	ATGGCGTTTGCTTCAAACTCGGTTCTGAAAACGCTGAGGCTGAAGAATCCAAAGCTGGTGCTTTTGGAATCATGCAGCAACCTGATCGACCTCACAATTATCCACGCCCACATGCTCCGAACCCACTTCTTCTTCGACGTCTTTGCCGTCAGTCGCCTCATCGCTCTCTGCACAGACTCCAACAAGAACCTTCTCCACTACGCCATAAGGCTATTCCCCCAAATCGAAAACCCAAACCTATTCATCTTGAACGCCCTCATACGAGGTTGTTCCACCAGCGATGACCCCGCTGCTTCCTTTCGCTATTACATCCAATCGCAGCGCATTGGTCTCTTGCCTGATAACATCACTTACCCGTTTCTGGTTAAGGCTTGTGCTCAACTTGAGAATGCTATTATGGGCACGCAAGCACATGGTCAAATCATAAAGCATGGATTTGAACGCGATTGCTATGCCCAGAACTCCCTCGTTCATATGTATGCCACTGTTGAAGATTCAAAGTCTGCAAGATGCGTTTTTGAAGAGATTTCTGGGTTTGATGTGGTGTCTTGGACTTCCATGATTGCTGGGTACCATAAAGGGGGGGATGTTGACTCTGCACGCGAACTGTTTGATATAATGCCGGAGAGAAATTTGGTGACTTGGAGCACTATGATTAGTGGGTATGCCCGAAACAATAGGTATGATAAGGCTGTTGAGCTGTTTCATGTTCTTCGGAGTGAAGGGGTGATGGCTAATGAGCCTGTCATGGTGGGGGTGATATCCGCTTGTGCTCATCTGGGTGCTCTTGCTATGGGGAAGGAAGCTCATGAGTATGTGGTTATGAATGGCTTGTCTTTGAATCTGATTCTTGGGACAGCTCTTGTTGACATGTATGCGAGATGTGGAAACATTGCGAAAGCTATTCGGGTTTTTGAGCAGTTGGCCGAGAAGGACACACTTTGTTGGACAGCTTTGATTGCTGGACTAGCCATGCACGGCCATGCAGAGAAAGCGCTTTGGTATTTTTCGGAAATGGTGAAATCCGGGCTAGTTCCGTGGGACGTTACATTTACGGCGGTGTTGACAGCTTGCAGCCATGGAGGATTGGTAGATAGGGGCCTAGAAATATTTGAGAGCATGAAACATGATCATGGAATTGAGCCAAGATTGGAGCATTATGGATGTATGGTTGACCTACTTGGCCGTGCAGGGAAGTTGGCGGAGGCAGAGAAATTTGTTCTTGAAATGCCCATAAAGCCGAATGCTCCGATATGGGGAGCATTGCTAGGAGCTTGCCGGATTCACAGAAATGCAGAGGTTGGGGAGAGAGTTGGAAAGATTTTGATAGAGATGCAACCAGAACACAGTGGTTACTATGTGCTGCTTTCAAACATATATGCTCGCACAAACAAGTGGAGAGATGTTACCATTATGAGAGAACTCATGAAGGAAAAAGGAGTAAGAAAGCCTCCTGGGTATAGTCTCATTGAGGTAGATGGAAAAGTTCATGAATTTACAATTGGAGATAAATCACACCCAGAAATTGAGAAAATAGAGAGAATGTGGGAAGATATACTGCAAAAAATAAGGCTGGCAGGATACATTGGAAATACTGATGAAGCTTTGTTTGACATAGATGAGGAAGAAAAGGAAGATGCACTTGACAGGCATAGTGAGAAGCTGGCAATTGCATATGGAATTATGAAGATTCGACCTCCTTCACCAATTCGGATTGTGAAGAACTTGCGGGTTTGTGAAGATTGTCACACTGCTACAAAGTTGATTTCAAAGGTTTTCCAAGTAGAGTTGATTGTGAGAGATCGAAACCGATTCCATCACTTTAAAGAAGGCACGTGTTCTTGTATGGATTACTGGTGA	1860	0.4522	MAFASNSVLKTLRLKNPKLVLLESCSNLIDLTIIHAHMLRTHFFFDVFAVSRLIALCTDSNKNLLHYAIRLFPQIENPNLFILNALIRGCSTSDDPAASFRYYIQSQRIGLLPDNITYPFLVKACAQLENAIMGTQAHGQIIKHGFERDCYAQNSLVHMYATVEDSKSARCVFEEISGFDVVSWTSMIAGYHKGGDVDSARELFDIMPERNLVTWSTMISGYARNNRYDKAVELFHVLRSEGVMANEPVMVGVISACAHLGALAMGKEAHEYVVMNGLSLNLILGTALVDMYARCGNIAKAIRVFEQLAEKDTLCWTALIAGLAMHGHAEKALWYFSEMVKSGLVPWDVTFTAVLTACSHGGLVDRGLEIFESMKHDHGIEPRLEHYGCMVDLLGRAGKLAEAEKFVLEMPIKPNAPIWGALLGACRIHRNAEVGERVGKILIEMQPEHSGYYVLLSNIYARTNKWRDVTIMRELMKEKGVRKPPGYSLIEVDGKVHEFTIGDKSHPEIEKIERMWEDILQKIRLAGYIGNTDEALFDIDEEEKEDALDRHSEKLAIAYGIMKIRPPSPIRIVKNLRVCEDCHTATKLISKVFQVELIVRDRNRFHHFKEGTCSCMDYW	619

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aip06g03592	619	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	180	210	IPR002885	-
	Aip06g03592	619	Pfam	DYW family of nucleic acid deaminases	527	619	IPR032867	GO:0008270
	Aip06g03592	619	Gene3D	Tetratricopeptide repeat domain	286	505	IPR011990	GO:0005515
	Aip06g03592	619	Gene3D	Tetratricopeptide repeat domain	18	177	IPR011990	GO:0005515
	Aip06g03592	619	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	312	346	IPR002885	-
	Aip06g03592	619	PANTHER	REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED	82	593	-	-
	Aip06g03592	619	Gene3D	Tetratricopeptide repeat domain	178	277	IPR011990	GO:0005515
	Aip06g03592	619	TIGRFAM	PPR: pentatricopeptide repeat domain	315	347	IPR002885	-
	Aip06g03592	619	TIGRFAM	PPR: pentatricopeptide repeat domain	349	382	IPR002885	-
	Aip06g03592	619	TIGRFAM	PPR: pentatricopeptide repeat domain	182	212	IPR002885	-
	Aip06g03592	619	TIGRFAM	PPR: pentatricopeptide repeat domain	213	244	IPR002885	-
	Aip06g03592	619	Pfam	PPR repeat	213	243	IPR002885	-
	Aip06g03592	619	Pfam	PPR repeat	386	410	IPR002885	-
	Aip06g03592	619	Pfam	PPR repeat	182	211	IPR002885	-
	Aip06g03592	619	PANTHER	PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN	82	593	-	-
	Aip06g03592	619	Pfam	PPR repeat family	311	359	IPR002885	-
	Aip06g03592	619	Pfam	E motif	429	491	IPR046848	-
	Aip06g03592	619	Pfam	E+ motif	496	523	IPR046849	-
	Aip06g03592	619	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	211	245	IPR002885	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aip06g03592	Aip-Chr6	133348014	133349884	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aip06g03592	21	619	Glycoside Hydrolase	AT3G49170	34.206	4.77e-123	382

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aip06g03592	-		-	gmx:100797063	1035.4