Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g03574 ATGAGTTTCACTTTCATCAAAAAATTCGTTACTGAGTTGACTCGCTTCCCTTACACCTCCGCTTTTGTTCTCGCGTTCATCACTGTCGCAGCAGCTGCCGTCAGATTCCGCCGTCTGTCCAAACCGACGTCGTTTACGATGTCTTCTTCATCAGTAAACGACCCCGTTCAGCGCAACCGCATCTTCTCGAGCAAGCTCTACTTCGATGTGCCTCGCTCCAAGGTTCCGATTATCTATTCTGCATCTTATGACATATCCTTTCTCGGCATTGAGAAACTGCACCCGTTTGATTCTTCTAAATGGGGGCGAGTTTGTAGATTCCTAGTGTCGTTTGGTGTTCTGGATAAGAAATGCATTGTTGAGCCTCTTGAAGCTTCAAAGGATGATCTTTTAGTGGTGCACTCAGAATCGTACTTGAATAGCCTGAAGGAAAGTTCAAATGTGGCTACAATAATTGAGGTCCCTCCGGTGGGGTTATTTCCCAATTGTCTTGTGCAACAAAAAGTTCTTCATCCATTCCGGAAGCAGGTTGGTGGAACTATTTTGTCTGCAAAACTTGCAAAAGAGAGAGGATGGGCCATTAACGTAGGAGGAGGATTTCATCATTGCTCTGCAGAAAAAGGAGGTGGATTTTGTGCTTATGCAGATATTTCTCTTTGCATCCACTTTGCTTTGGTTCGGTTGAATATATCAAGGGTGATGATCATTGATCTTGATGCACATCAAGGAAATGGCCATGAAACAGACTTTGCCTATGATAGCCGAGTCTACATTTTGGACATGTACAACCCTGGAATATACCCTTTGGATTATGAGGCAAGGAACTACATAAATCAGAAAGTTGAAGTGAAGAGTGGGACACTCACGGAAGATTACCTGCAGAAATTAGATGAAGCACTAGAGGTTGCTGGGCGTAGCTTTGACCCTGAGTTGATAGTTTACAATGCCGGAACTGACATCTTAGATGGTGATCCATTAGGAAGGCTAAAGATTAGTCCTGATGGGATTACCCTCAGAGATGAGAAAGTTTTTCGGTTTGCTCGTGAGAAGAACATTCCTATTGTCATGCTCACGTCAGGTGGTTATATGAAATCCAGTGCTAGAGTCATTGCAGATTCAATAGTCAATCTGTCCAAGAAATGCTTGATAGAAGACAAACAGGATTCCTAA 1170 0.4333 MSFTFIKKFVTELTRFPYTSAFVLAFITVAAAAVRFRRLSKPTSFTMSSSSVNDPVQRNRIFSSKLYFDVPRSKVPIIYSASYDISFLGIEKLHPFDSSKWGRVCRFLVSFGVLDKKCIVEPLEASKDDLLVVHSESYLNSLKESSNVATIIEVPPVGLFPNCLVQQKVLHPFRKQVGGTILSAKLAKERGWAINVGGGFHHCSAEKGGGFCAYADISLCIHFALVRLNISRVMIIDLDAHQGNGHETDFAYDSRVYILDMYNPGIYPLDYEARNYINQKVEVKSGTLTEDYLQKLDEALEVAGRSFDPELIVYNAGTDILDGDPLGRLKISPDGITLRDEKVFRFAREKNIPIVMLTSGGYMKSSARVIADSIVNLSKKCLIEDKQDS 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g03574 389 CDD HDAC_classIV 94 377 IPR044150 GO:0004407|GO:0016575
Aip06g03574 389 Pfam Histone deacetylase domain 94 375 IPR023801 -
Aip06g03574 389 PANTHER HISTONE DEACETYLASE 11 49 387 - -
Aip06g03574 389 PANTHER HISTONE DEACETYLASE 11 49 387 - -
Aip06g03574 389 SUPERFAMILY Arginase/deacetylase 72 377 IPR023696 -
Aip06g03574 389 PRINTS Histone deacetylase superfamily signature 198 221 IPR000286 -
Aip06g03574 389 PRINTS Histone deacetylase superfamily signature 232 247 IPR000286 -
Aip06g03574 389 PRINTS Histone deacetylase superfamily signature 309 319 IPR000286 -
Aip06g03574 389 Gene3D Histone deacetylase domain 75 388 IPR037138 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g03574 Aip-Chr6 133211741 133216563 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g03574 K11418 - gmx:100781276 612.453
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g03574 06 133211741 133216563 Aip06g03574 06 133211741 133216563 ECH