Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g03555 ATGGCTTGGAGGCCTTTATTAACGCAGGTTTCAAGAAGACAATCAGAATTTGGACAGGCAAAACATTTGTTTCTTAGAGGCCATTTTTCCATTAATAAGTTCAGAGATTGTGCAGGGAATAGGCTTTTGTCCACCCAAGAGAGATTCAAGTCCAGCTATGTTGGTGACTTCAACCGTCGAATACGTGATGCAGATGAAGCCGTTGAAATTTCTCATCTGAAAGAACTTTACCATCGAAACGAACCTGAAGCTGTAATTAGGTTATTTGAAAGTCAGCCATCTCTGCATACTAATCCTTCAGCACTTTCCGAATATATTAAAGCATTGGTTAAAGTTGATAGGCTGGATGAAAGTGAATTATTGAAGACATTGAGAAGAGGTATGCCCAATGCAGTGAGGGAGGAAGAAAGCATAGATGGCTTCTCTTCTCTTAGAAATGTGCGGGGGGAAGAAAGTATAGGTGGTTTCTCTGCTTTTAGAAATCTGGGAACTTCTGCAAGAGAGAGAATTCTCGGGACTGCAAGTTCACCCGTTCATATGGTGGCTACAGAAGCTGCGAGTTTTAAAGATCGACTATGGCGTGCATTTAGGTCCATTGTAGTTGTTTTTTTGTTGATTTCGGGTGCAGGAGCTCTCGTAGAGGATAAAGGAGTTGGTCAAGGGCTTGGTGAACATGAAGGAGTGCTACCCAGCATGGAGTCAAGTACAAGATTTAATGATGTAAAAGGTGTTGACGAGGCAAAGGCAGAGCTGGAAGAAATTGTTCACTACCTCCGGGATCCTAAGCGCTTTACTCGGCTTGGTGGTAAGCTTCCAAAAGGAGTGTTGCTTGTTGGTCCACCTGGAACTGGAAAAACTATGTTGGCAAGAGCTATAGCTGGAGAGGCTGGGGTTCCTTTCTTCTCAAGCAGTGGGAGCGAATTTGATGAGATGTACGTGGGTGTAGGTGCACGAAGGGTCAGGGATCTTTTTTCCGCTGCTAGGAAGCGATCACCTTCTATAATCTTCATTGACGAGATAGATGCTATTGGAGGGAACCGAAGTGCGAAGGACCAAACTTACATGAAGATGACATTAAATCAATTGCTGGTTGAGTTAGATGGATTCAAACAAAATGAAGGCACAATTGTGATTGGAGCAACTAATTTTCCAGAGTCATTGGATAAGGCTTTGGTGAGACCTGGTCGATTTGATCGCCATGTTGTTGTTCCCAATCCAGATGTAGAAGGAAGACGGCAGATTTTGGAGTCGCACATGTCAAAGGTTATGATGGCTGATGATGTCGATTTGATGGTCATTGCTCGAGGAACACCTGGGTTCTCTGGTGCTGACCTTGCAAACTTGGTTAATGTAGGCGCCCTTAAGGCTGCAATGGACGGTGCTAAAGCTGTGACCATGGCCGATTTAGAGTATGCAAAGGACAAGATCATGATGGGAAGTGAACGCAAGACAGCCATCATATCTGAGGAATCGCGAAAGTTGACTGCTTACCATGAGGGTGGCCATGCCCTTGTGGCCATTCACACCGATGGGGCCCTTCCCGTTCACAAGGCGACAATAGTTCCCCGAGGGATGGCCCTCGGCATGGTTACTCAAATACCCGAGAAGGATGAGACCAGCATATCCCGTAAACAGATGCTTGCCCGGCTTGATGTTTGCATGGGAGGCCGGGTAGCAGAAGAGCTCATTTTCGGGGCAAATGAAGTTACTGCTGGCGCGTCGTCCGACCTCAAGCAGGCGACTAAGCTAGCAAGGGAAATGATTACTAAATATGGTATGGGAAAGGAGACTGGACTTGCCACTCACAATTACAATGATGATGGGAGAAGCATGAGCTCAGAGACAAGGCTTCTTATTGAGAAAGAGGTGAAGCATTTCTTGGAGAGAGCTTACAACAATGCAAAAACAATTCTAACCACTCACAACAAGGAACTCCATGCTCTTGCAAATGCTCTTCTTGAACATGAGACCCTTTCAGGAACTCAGATAAGAACACTTCTTGCTCAAGTTAGATCCCAGAAACAGCAGCAGCAGCAGCCGCACATGGTCGAGGTGCAGAGCAGTTCGCCGTCCAGCANNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTGCTGCTGCAGCCGCAGCTGCTGCGGCTGCTGCTGCCACTGCCGCCGCCAAGTCTCAAGGTGTTCCAGTTGGATCTTAGCAGGACGAATACAGTGGCAGTTACCAGATGA 2217 0.4596 MAWRPLLTQVSRRQSEFGQAKHLFLRGHFSINKFRDCAGNRLLSTQERFKSSYVGDFNRRIRDADEAVEISHLKELYHRNEPEAVIRLFESQPSLHTNPSALSEYIKALVKVDRLDESELLKTLRRGMPNAVREEESIDGFSSLRNVRGEESIGGFSAFRNLGTSARERILGTASSPVHMVATEAASFKDRLWRAFRSIVVVFLLISGAGALVEDKGVGQGLGEHEGVLPSMESSTRFNDVKGVDEAKAELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSSSGSEFDEMYVGVGARRVRDLFSAARKRSPSIIFIDEIDAIGGNRSAKDQTYMKMTLNQLLVELDGFKQNEGTIVIGATNFPESLDKALVRPGRFDRHVVVPNPDVEGRRQILESHMSKVMMADDVDLMVIARGTPGFSGADLANLVNVGALKAAMDGAKAVTMADLEYAKDKIMMGSERKTAIISEESRKLTAYHEGGHALVAIHTDGALPVHKATIVPRGMALGMVTQIPEKDETSISRKQMLARLDVCMGGRVAEELIFGANEVTAGASSDLKQATKLAREMITKYGMGKETGLATHNYNDDGRSMSSETRLLIEKEVKHFLERAYNNAKTILTTHNKELHALANALLEHETLSGTQIRTLLAQVRSQKQQQQQPHMVEVQSSSPSSXXXXXXXXXXLLLQPQLLRLLLPLPPPSLKVFQLDLSRTNTVAVTR 738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g03555 738 Gene3D Peptidase M41 480 679 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Aip06g03555 738 MobiDBLite consensus disorder prediction 674 694 - -
Aip06g03555 738 CDD AAA 272 404 - -
Aip06g03555 738 Gene3D - 406 479 - -
Aip06g03555 738 SUPERFAMILY FtsH protease domain-like 486 670 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Aip06g03555 738 Pfam Peptidase family M41 486 665 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Aip06g03555 738 ProSitePatterns AAA-protein family signature. 375 393 IPR003960 GO:0005524|GO:0016887
Aip06g03555 738 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 235 475 IPR027417 -
Aip06g03555 738 MobiDBLite consensus disorder prediction 674 696 - -
Aip06g03555 738 Pfam AAA+ lid domain 427 470 IPR041569 -
Aip06g03555 738 Hamap ATP-dependent zinc metalloprotease FtsH [ftsH]. 4 730 IPR005936 GO:0004176|GO:0004222|GO:0016020
Aip06g03555 738 SMART AAA_5 271 407 IPR003593 -
Aip06g03555 738 PANTHER METALLOPROTEASE M41 FTSH 9 702 - -
Aip06g03555 738 Gene3D - 224 405 IPR027417 -
Aip06g03555 738 PANTHER ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 4, MITOCHONDRIAL-LIKE 9 702 - -
Aip06g03555 738 Pfam ATPase family associated with various cellular activities (AAA) 275 404 IPR003959 GO:0005524|GO:0016887
Aip06g03555 738 TIGRFAM FtsH_fam: ATP-dependent metallopeptidase HflB 229 667 IPR005936 GO:0004176|GO:0004222|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g03555 Aip-Chr6 133033141 133038261 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g03555 43 667 Miscellaneous Gene Families AT5G53170 49.221 0.0 568
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g03555 K08955 - jre:109020493 1030.78