Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g03501 ATGCCTGGCGTTCTCGACGACCCTTCCTGCGCCGCGTGTGGAGCACGCGCCACCAAGAAGTGCTCGCGATGCAAAGCTGTTCGATACTGCTCGCAAGAATGCCAACAGTCACATTGGAAGTCCGGACATAAGGCGAAGTGTACAGTAAATTCGAATAAAAATGGGACTAACAATTGTGTGTCAAAGCCTTCGGCAGCTGGGGAGAAAAGTTCATCTTCAATTGCATTGATACCAAGTTCCAAAACTTCGAGGCCTATCAAGAAGCCTAAAGATGTTCTTTTTCCTTACGATGAATTCATTAAATTCTTTAACTCGGAAAAGCCAGGATTTCCTCCTTGTGGACTCCTGAATTGTGGAAACAGGCATAGGATCAGAGTGAAATTAACATTCATTACGAGTCTTTGCAGTTGCTTTGGAAATGTGGTTCTTCAGTGTCTCTCATTCACAAGGCCACTTGTTGCGTACTTGTTGGAAAAGGGCCACCACAGAGAATGCAGTTGCAATAGTGATTGGTGCTTTCTTTGTGAATTTGAAGCTCATGTTGAAAGAACAAGGTCAAGTTCTCAGGCATTTTCTCCGACCAGTATTCTTTCCCGTTTGTCTAATATTAGTGGTACTTTGGGTTGTGGAAGTCAAGAAGATGCTCATGAGTTCATGAGATTATGCATTGATGCTATGCAATCTGTTTGCCTTGATGAATTTGGTGGAGAGAAGGCCGTCCCTCCTAAGCTTCAGGAAACAACTCTTATTCAACACATTTTTGGTGGCCGGCTTCAATCCGAGGTGTTTTGCACAAAATGCGAAAATATTTCAAAACAGTATGAAAATATGATGGATTTGACTGTTGAAATTCATGGAGATGCTGCCTCCTTAGAAGAATGTCTAGACCAGTTTACAGCCAAGGAGTGGCTCCATGGAGAAAATATGTATAAATGTGATGGGTGCAAAGACTATGTTAAGGCGTGGAAGCGTCTCACTGTGAATCGTGCCCCAAATATTCTTACAATTGCCTTAAAAAGATTTCAGAGTGGCAGGTTTGGAAAACTTAACAAGAGAATATCATTCCCAGAGACTTTAAATCTTAGCCCCTACATGAGTGAAGCTGGAGATGGATCTGACATTTACAAGCTATATGCTGTTGTAGTCCATATTGATATGCTAAATGCTTCATTCTTCGGCCACTACATCTGCTACATCAAGGATTTCAATGGAAACTGGTATAGGATTGATGATTGGAAGGTCACGAAGGTGGACATGGAGGAGGTACTTTCTCAAGGTGCATACATGCTATTGTATAACAGGTCTAGTGCTCAACCATCCAGCCTTCAAATTCAAGCAACGGAATCATCAGAACCAGCACCAGCGCAAACGGTTAAGGTGGAACGAGAGCAAGGTCCAAATGAACTAGTTGAATGCCTCTCAAATATGAATGCTCAGGCTGCGACTTGCAATGGAGCTCGCGAGGTTTCTCCATCTTATAGTAGTCCAGAACCGAAGGTCTCTGGCAACAAATATGAGCCTCTGTCTGGAATGAACGCTGATGCCAAAGGAGAGCATTCTGAGGATGTCGATATTAGTGATGCTGAGCCAACCGATGTTACAAATATTTCCAGTAGTAAAGTTGAATCATCCGACATACCTATTTCTCCAGCCGACAAAGATTCGCGGAACGTAGACATGGACCAATCCCAAGCGAAGACCTCTGGCTGCACAGAAAAGAAAGACGACACTCATACAGTTAGGTCTGGCCCCTCTCCAGTTTCGCCAACCAATTTTGCTGTTTCAATGGGTCGTCAAAACATGGGAGAGAACTTGGAACATAATACAGAAGTGGTTAAATGCAAGTTAACAACAAAAGATAATGCATACTGTGCCAATGGCAATGGCAATGGCTATGCCAGTGCGAACAAATCCATTACTGCAGTTGAGGATGCCGAAACTGACCAAGGAAATGAAGCTAACAAAGTAGGAATAAAAGGGGACAAGTTAATAATGAATCTAAACAGAAGATTTATTCTTGCTCTAACAGAAGATGGCAAATTTTTTGAACGGGTTGATGAAAGTGATGCAACAAGAGAAAAAGTATCTGTTGCGGTTAGAGTTGTAGGAACACAAGATTATGGTATGTTGGAGGCTGGAGTAAGAAAATTAGATGCACAAGCAAGGAAGATAGAGAGATTAAGTGTGAAGATAGAGAGATTGATTGTGAAATATGGACAAATAGATGCTTGTGTAGAACACAATCTATCACTTCACTTCACTTGTGTTCTGTTCAATTCACCACCTTCTCTGCTTATTGTTCTTGCTGCTGCTTCTCACTCAACAGTTTCACTTCTATCATCAGTTTGTTTTCGAGATTTCGGGTTAATGGAACGTGGTTTGAAGAGAAAGTTACCACAAAATAACTTTTCTATGGATGAACTCAATGAAGATCTCTTGGAAAGGATACTTTCATGGCTCCCAACTTCAGCATTCTTTCGCCTCAATTCTGTCAGCAAAAGATGGAAATCTGCTGCTAATTCTGCGAGTTTCAAGCTCGCCTGCTCGCGAATTCCTTCCCGGGATCCTTGGTTCTTGATGGTTGCCCCAAACCTCAAGCAATCTGTTGTGTTTAACTCTGCTGAAAACAGTTGGAAAAGGCTCAATTATCCGTGCCATCTTCGCGAAGATTCCGACCAAGGTTGCATGCCAGTTGCAGCCTCTGGTGGCCTAGTTTGCTACCGGAAATCGTCCGGAAATTTCATCGTGTGCAATCCGGTGACAGGGTCTTGTAGTGAACTCCCTCCATTGCATTTTGCCTCAGAAAATCATCAATCTCTCAATGCTGTTGTGATGAGTAGTACAACTTCAAATGGCCAACAATCCTACAAGATTGTGTTGGTTCTTGGTGAAATTCCAAATCTTTTCCTTAAATTCTACAATTCAAGCTCTGGTTGTTGGGAAGATGAGTCTGCACTGAAGAAGAATGTTGATGATAGTTCAATGGATTGTGATTCGACCGATGCCAATGTTGTTTACTTCCTTAGCACAACAGGAACTGTGGTTGCTAGTAACATGCAGAGAAGCCCATCGAAGCAATATTCATCGGTTATTACTAACAAAGACGGCTGGGAGACAGTCTACTTCCTTAGCTCGTCCGGGACAGTAGTAGCTTGTAATTTGGCAGACAAATCCTTCTTTGAGTATCCCAGGTTGTTGCCTGTTTTCAGCGAGTATTCTATTGATATTGCAGTGTGTAATGGTGAACTGGTAGTTGTTCTGCTATCAGAATTCTTGGAGAGTGCTAGTCTTAGGGTGTGGAAATACGACGAGGCTAACCGGCGCTGGCAACAGATTGTAGTGATGCCAGCAGCTATGTCTCATGAGTGGTATGGAAGGAAGGTGGATATTAACTGCGTCGGAGCAGGCGATCGGATATTTATATGCTTGAACTCTCCTGAGACTTGCACTTATATAGTGTGTGATTTGGTGACCAACACTTGGGTTGAATTGCCAAAATGTTGCATTAATGGTGAAGTCATGGAATTCATGTCTGCATTTTCATTTGAGCCTAGGATAGAGGCTGCTGTATGA 3573 0.4265 MPGVLDDPSCAACGARATKKCSRCKAVRYCSQECQQSHWKSGHKAKCTVNSNKNGTNNCVSKPSAAGEKSSSSIALIPSSKTSRPIKKPKDVLFPYDEFIKFFNSEKPGFPPCGLLNCGNRHRIRVKLTFITSLCSCFGNVVLQCLSFTRPLVAYLLEKGHHRECSCNSDWCFLCEFEAHVERTRSSSQAFSPTSILSRLSNISGTLGCGSQEDAHEFMRLCIDAMQSVCLDEFGGEKAVPPKLQETTLIQHIFGGRLQSEVFCTKCENISKQYENMMDLTVEIHGDAASLEECLDQFTAKEWLHGENMYKCDGCKDYVKAWKRLTVNRAPNILTIALKRFQSGRFGKLNKRISFPETLNLSPYMSEAGDGSDIYKLYAVVVHIDMLNASFFGHYICYIKDFNGNWYRIDDWKVTKVDMEEVLSQGAYMLLYNRSSAQPSSLQIQATESSEPAPAQTVKVEREQGPNELVECLSNMNAQAATCNGAREVSPSYSSPEPKVSGNKYEPLSGMNADAKGEHSEDVDISDAEPTDVTNISSSKVESSDIPISPADKDSRNVDMDQSQAKTSGCTEKKDDTHTVRSGPSPVSPTNFAVSMGRQNMGENLEHNTEVVKCKLTTKDNAYCANGNGNGYASANKSITAVEDAETDQGNEANKVGIKGDKLIMNLNRRFILALTEDGKFFERVDESDATREKVSVAVRVVGTQDYGMLEAGVRKLDAQARKIERLSVKIERLIVKYGQIDACVEHNLSLHFTCVLFNSPPSLLIVLAAASHSTVSLLSSVCFRDFGLMERGLKRKLPQNNFSMDELNEDLLERILSWLPTSAFFRLNSVSKRWKSAANSASFKLACSRIPSRDPWFLMVAPNLKQSVVFNSAENSWKRLNYPCHLREDSDQGCMPVAASGGLVCYRKSSGNFIVCNPVTGSCSELPPLHFASENHQSLNAVVMSSTTSNGQQSYKIVLVLGEIPNLFLKFYNSSSGCWEDESALKKNVDDSSMDCDSTDANVVYFLSTTGTVVASNMQRSPSKQYSSVITNKDGWETVYFLSSSGTVVACNLADKSFFEYPRLLPVFSEYSIDIAVCNGELVVVLLSEFLESASLRVWKYDEANRRWQQIVVMPAAMSHEWYGRKVDINCVGAGDRIFICLNSPETCTYIVCDLVTNTWVELPKCCINGEVMEFMSAFSFEPRIEAAV 1190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g03501 1190 CDD Peptidase_C19E 112 432 - -
Aip06g03501 1190 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 19 12 654 - -
Aip06g03501 1190 Coils Coil 717 737 - -
Aip06g03501 1190 ProSiteProfiles Zinc finger MYND-type profile. 10 47 IPR002893 -
Aip06g03501 1190 Pfam Ubiquitin carboxyl-terminal hydrolase 136 432 IPR001394 GO:0004843|GO:0016579
Aip06g03501 1190 ProSitePatterns Zinc finger MYND-type signature. 10 47 IPR002893 -
Aip06g03501 1190 Gene3D - 860 1181 IPR015915 GO:0005515
Aip06g03501 1190 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 12 654 - -
Aip06g03501 1190 Gene3D - 5 53 - -
Aip06g03501 1190 SMART fbox_2 808 848 IPR001810 GO:0005515
Aip06g03501 1190 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 126 435 IPR028889 -
Aip06g03501 1190 ProSiteProfiles F-box domain profile. 802 847 IPR001810 GO:0005515
Aip06g03501 1190 MobiDBLite consensus disorder prediction 487 591 - -
Aip06g03501 1190 Gene3D - 799 845 - -
Aip06g03501 1190 MobiDBLite consensus disorder prediction 530 545 - -
Aip06g03501 1190 SUPERFAMILY HIT/MYND zinc finger-like 8 49 - -
Aip06g03501 1190 SUPERFAMILY F-box domain 803 861 IPR036047 GO:0005515
Aip06g03501 1190 SUPERFAMILY Galactose oxidase, central domain 859 1118 IPR011043 -
Aip06g03501 1190 Pfam MYND finger 10 47 IPR002893 -
Aip06g03501 1190 SUPERFAMILY Cysteine proteinases 109 439 IPR038765 -
Aip06g03501 1190 Pfam F-box domain 806 844 IPR001810 GO:0005515
Aip06g03501 1190 Gene3D Cysteine proteinases 111 446 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g03501 Aip-Chr6 132161338 132174134 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g03501 5 471 Miscellaneous Gene Families AT4G31670 63.502 0.0 601
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g03501 K11855 - gmx:100799652 844.343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g03501 06 132161338 132174134 Aip06g03501 06 132161338 132174134 ECH