Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g03428 ATGACAACAAGCATGGTCACATTTTTCACAACCCTTTTGGTTATACTCATGAGTTTCCAAACTGAATCATTGCAACATCCAATTCCATCGCCATATTATTCAGGATCAGTTAAAGCTGGATATTGGCCTTCAGGTAATTCCCTCTCACCTTCTTCCATTGACACAAGGTACTTCACACACATCTACTATGCCTTTGTAGAGCCAGAACCAAACACCTTCAATCTCATAATCACATCCTCCGACCAAAACTACATACCTCAATTCATCAATGGTTTAAGCAACCGGAACCCTCCCGTCAAGACCATATTGTCCATCGGAGGGGGTGCCAGCAATGCTACCTTATTTTCTTTGATGGCTAGCACGGTAAAAAGCCGTGCAGCCTTCATAAACTCGACAATCCAAGTGGCCCGTCAATACGGTTTTGACGGGCTAGACTTGGATTGGGAGTTCCCTGAAAATGAACAAGACATGGCAAACCTTGCTTTGTTGTTCAAAGAATGGCACCAGGCTGTGGTTTTGGAAGCCAAGGTTCATAGAAGGCTACGTTTGCTTTTGACCGCAGCTGTGTACTATGCTCACACAATTGTACTTATTGGGCCTGGCCCAAGGTCTTATCCGGCCCAAGCTATTAAAGATTACTTGGATTGGGCCAGCCCTATGTGCTTTGATTACCATGGTGCATGGTCCAATTTCACTGGCTACAATAATGCTTTATTTGATCCTAAGTCCAATATAAGCACCCAATTTGGTCTCGGATCTTGGATCCAGTCCGGCGTCCCGCCCTCAAAGCTGGTTTTCGGGTTACCGCTTTACGGGCGAGCGTGGAAGCTCCAAGATCCGAAAGTTCATGGGGACGGAGCGCCCGCAGTTGGAGCAGCCGATGGCACGGATGGTACTATGAATTATAATGATATTTTGGAATTTAATAAAAAGAATAAGGCTACAGTTGTGTTTGATAGGTCAGCTGTGTCTTATTACACTTATGCTGGCACTACTTGGATGAGCTATGATGATGCACCTTCCATGACAAGGAAGGTTCAATATTCTAAGTCTTTGGGATTGAAAGGATATTTCTTTTGGCAAGTTGGAGGCGATAAGAATTGGACTATGTCAAGACAAGCTTCAAGTACGTGGGGACACTGA 1143 0.4471 MTTSMVTFFTTLLVILMSFQTESLQHPIPSPYYSGSVKAGYWPSGNSLSPSSIDTRYFTHIYYAFVEPEPNTFNLIITSSDQNYIPQFINGLSNRNPPVKTILSIGGGASNATLFSLMASTVKSRAAFINSTIQVARQYGFDGLDLDWEFPENEQDMANLALLFKEWHQAVVLEAKVHRRLRLLLTAAVYYAHTIVLIGPGPRSYPAQAIKDYLDWASPMCFDYHGAWSNFTGYNNALFDPKSNISTQFGLGSWIQSGVPPSKLVFGLPLYGRAWKLQDPKVHGDGAPAVGAADGTDGTMNYNDILEFNKKNKATVVFDRSAVSYYTYAGTTWMSYDDAPSMTRKVQYSKSLGLKGYFFWQVGGDKNWTMSRQASSTWGH 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g03428 380 Pfam Glycosyl hydrolases family 18 39 365 IPR001223 GO:0005975
Aip06g03428 380 SUPERFAMILY (Trans)glycosidases 36 378 IPR017853 -
Aip06g03428 380 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 36 380 IPR001223 GO:0005975
Aip06g03428 380 PANTHER CHITINASE 25 379 - -
Aip06g03428 380 SUPERFAMILY Chitinase insertion domain 271 336 IPR029070 -
Aip06g03428 380 PANTHER CLASS V CHITINASE CHIT5A 25 379 - -
Aip06g03428 380 SMART 2g34 36 365 IPR011583 GO:0008061
Aip06g03428 380 ProSitePatterns Glycosyl hydrolases family 18 (GH18) active site signature. 141 149 IPR001579 GO:0004553|GO:0005975
Aip06g03428 380 CDD GH18_plant_chitinase_class_V 37 371 - -
Aip06g03428 380 Gene3D Glycosidases 51 366 - -
Aip06g03428 380 Gene3D - 270 336 IPR029070 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g03428 Aip-Chr6 131229493 131230953 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g03428 37 378 Glycoside Hydrolase AT4G19810 43.605 3.69e-94 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g03428 K01183 - gmx:100787511 524.628
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g03428 06 131229493 131230953 Aip06g03428 06 131229493 131230953 ECH