Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g03300 ATGCTCTTCCACAACCCTCTTCGTCACTCACTATCTCCCTTACTTTTCACACTCAAACAAAAACCCACTCCTACATTCTCATTCTCCCTTCTTCATCACCACCACCGCTTCTCTTCTTCCTGGCTCTCCCTTCGCGGAAACCCCCTCATTAAATGGCCAACCCTCCCAATCCCTCAACACCCTCCCAATCCCAAACCCCAATCCTCCGAACCCCAACCCCACTCCAATTTCTCAACGCGCGATTTCTCCGCAATTGTCGATATATTCGCCGACTCTTCAATCTCTCCCGGACCGCTCCTCCATGCGGAACTGGATCGCTCCGGGATTGAACCGGGTTCAGAGCTACTGCTCGCCATGTTTGACCGTTTCGGTTCGTCGCCCAAGCTGCTTCACTCGCTGTTCCTGTGGGCCGAGAAGCAACCCGGGTTCAGACCTAATTCGAAGCTGTTCGACGCTGTGGTCAACGCTCTCGCTAAGTCCAGGGAGTTTGACTCCGCTTGGACGCTGATTCTTCATCACATCGATGATGGAAACGACGAGGGAGAAGCTTTGGTTTCCGTTGCCACCTTCAGTATCATGATTCGACGCTATGCACGTGCAGGTATGGTGCAACCTGCAATTCGTACATTTGAGTTTGCAAGAAAGCACAATTCAATTATAGATTCTGAGTCAGAATTGAGTTTATTTGACATATTGTTGGATTCACTTTGCAAAGAAGGGTCTGTTAGGGCAGCTCACGAGTATTTATGTCTAAGAAAGAAGATGAACCAGGGTTGGGTTCCTTCGATTCGGGCTTATAACATAATGTTAAATGGATGGTTTCGGTCAAGGAAACTCAAACACGGTGAGAGACTTTGGGAGGAGATGAAGAAGGAGAATGTAAGACCAACTGTTGTGACATATGGTACCCTTATCGAAGGGTATTGTAGAATGCGTCGAGTTGAAAAGGCGCTAGAGATGGTTGGCGACATGATCAAAGAAGGAATTGCACCAAATGCAATAGTGTATAATCCGATAATTGATGCATTGGCAGAAGCTGGGAGATTTAAAGAGGCCTTGGGGATGATGGAACGATTTCATGTTTTAGAAATTGGCCCTACCGAATCGACATATAATTCTCTGGTGAAGGGGTTTTGTAAGGCAGGAGATCTTGTAGGTGCTAGTAAGATTCTTAAAATGATGATAAGTAGGGGTTTCCTTCCAAGCTCCACCACCTATAATTACTTCTTTAGATACTTCTCAAGATGCGGGAAGATTGAGGAAGGGATGAACTTGTATACCAAGATCATCCAGTCCGGTTATACGCCTGATCGGCTAACATACCATCTTTTGGTGAAGATGTTATGTGAAGAGGAAAGGTTAGACTTGGCAGTTCGAGTTAGCAAGGAAATGAGACATAAAGGATTGGACATGGACTTGGCTACAAGTACCATGTTAGTTCATTTGCTATGCAAAATGCGTAGGTTGGAAGAGGCTTTTGCTGAATTCGAGGACATGATACGAAGGGGTATAGTTCCTCAGTACCTTACTTTCCAGAGACTGAATGCGGAGTTAAAGAAACAGGGTATGAATGAAGTGGCACAAAAGCTTCGCAATTTGATGTCTTCCATTCCCCATTCTACCAGCTTCCCAAATACTTACAGCGAAGACAACAATGATGCGCGTGCAAGAAGGAATTCTATAATTCAGAAGGCCCAAGCATTTTCTGATATGTTGAAAAACTGTAACGACCCTCGAGAACTCGAAAAGTATAAATGTTCTTCTGAAAATGATGTCTCAAGTGCGAACGGTTTGATAGAGGATATTGAGAGAAAGATAAGTGCCAAACGCACATCTTCTAACAAAACGCAAAATATCTGCTCTGCATTAGTCAGCAAGCGCATGGCTGCAGAATATATGGAGCAAGTGAATTGCAGGAATATCAATAAGGAAGAACAAAATGGTGACCAAAACTAG 1956 0.4468 MLFHNPLRHSLSPLLFTLKQKPTPTFSFSLLHHHHRFSSSWLSLRGNPLIKWPTLPIPQHPPNPKPQSSEPQPHSNFSTRDFSAIVDIFADSSISPGPLLHAELDRSGIEPGSELLLAMFDRFGSSPKLLHSLFLWAEKQPGFRPNSKLFDAVVNALAKSREFDSAWTLILHHIDDGNDEGEALVSVATFSIMIRRYARAGMVQPAIRTFEFARKHNSIIDSESELSLFDILLDSLCKEGSVRAAHEYLCLRKKMNQGWVPSIRAYNIMLNGWFRSRKLKHGERLWEEMKKENVRPTVVTYGTLIEGYCRMRRVEKALEMVGDMIKEGIAPNAIVYNPIIDALAEAGRFKEALGMMERFHVLEIGPTESTYNSLVKGFCKAGDLVGASKILKMMISRGFLPSSTTYNYFFRYFSRCGKIEEGMNLYTKIIQSGYTPDRLTYHLLVKMLCEEERLDLAVRVSKEMRHKGLDMDLATSTMLVHLLCKMRRLEEAFAEFEDMIRRGIVPQYLTFQRLNAELKKQGMNEVAQKLRNLMSSIPHSTSFPNTYSEDNNDARARRNSIIQKAQAFSDMLKNCNDPRELEKYKCSSENDVSSANGLIEDIERKISAKRTSSNKTQNICSALVSKRMAAEYMEQVNCRNINKEEQNGDQN 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g03300 651 PANTHER LEAF PROTEIN-LIKE 94 605 - -
Aip06g03300 651 MobiDBLite consensus disorder prediction 54 69 - -
Aip06g03300 651 Pfam Pentatricopeptide repeat domain 460 512 IPR002885 -
Aip06g03300 651 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 472 506 IPR002885 -
Aip06g03300 651 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 297 331 IPR002885 -
Aip06g03300 651 Gene3D Tetratricopeptide repeat domain 326 393 IPR011990 GO:0005515
Aip06g03300 651 Gene3D Tetratricopeptide repeat domain 394 465 IPR011990 GO:0005515
Aip06g03300 651 Gene3D Tetratricopeptide repeat domain 466 537 IPR011990 GO:0005515
Aip06g03300 651 Gene3D Tetratricopeptide repeat domain 251 325 IPR011990 GO:0005515
Aip06g03300 651 Pfam PPR repeat family 366 412 IPR002885 -
Aip06g03300 651 Pfam PPR repeat family 261 310 IPR002885 -
Aip06g03300 651 Pfam PPR repeat 335 358 IPR002885 -
Aip06g03300 651 Pfam PPR repeat 189 211 IPR002885 -
Aip06g03300 651 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 437 471 IPR002885 -
Aip06g03300 651 MobiDBLite consensus disorder prediction 53 76 - -
Aip06g03300 651 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 367 401 IPR002885 -
Aip06g03300 651 Gene3D Tetratricopeptide repeat domain 114 250 IPR011990 GO:0005515
Aip06g03300 651 TIGRFAM PPR: pentatricopeptide repeat domain 405 437 IPR002885 -
Aip06g03300 651 TIGRFAM PPR: pentatricopeptide repeat domain 370 402 IPR002885 -
Aip06g03300 651 TIGRFAM PPR: pentatricopeptide repeat domain 440 472 IPR002885 -
Aip06g03300 651 TIGRFAM PPR: pentatricopeptide repeat domain 334 367 IPR002885 -
Aip06g03300 651 TIGRFAM PPR: pentatricopeptide repeat domain 265 297 IPR002885 -
Aip06g03300 651 TIGRFAM PPR: pentatricopeptide repeat domain 299 333 IPR002885 -
Aip06g03300 651 TIGRFAM PPR: pentatricopeptide repeat domain 477 506 IPR002885 -
Aip06g03300 651 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 332 366 IPR002885 -
Aip06g03300 651 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 94 605 - -
Aip06g03300 651 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 402 436 IPR002885 -
Aip06g03300 651 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 262 296 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g03300 Aip-Chr6 129397854 129400308 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g03300 229 590 Glycosyltransferase AT1G05670 26.914 1.52e-44 168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g03300 - - gmx:100793484 874.389