Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g03217 ATGAATAACATTGTTAAGATTTTAAATTCCAGCAGCCAACCCAGCTGCGCGTTCTGCATTGATAAAAGAAGTTGCCGTGTGGTACGCTCGAAAACAAAGGTAATGAATTTTCTGATAGAGAGAGGAAAATCTCAGGAAGCTATTCCCATGTTTGAAAATCTGATTGTAGAAGGGCACCAACCATCTCTAGTAACGTACACAACCCTTTTAAATGCCTTGACCAATCAAAAGTGCTTCAAGCCTATACATTCTATCGTCTCACAAGTGGAAGCAAAACACATGAAGCCCGACCCGGTATTTTATAATGCACTTATAAATGCATTTGCTGAATCCGGTAACATGGATGATGCCATGAAAACTGTCCAAAAGATGAAAGAGAGTGGACTAAGACCAACCACTAGCACTTATAACACATTGATAAAAGGGTATGGTATTATAGGTAAGCCTGATGAATCGACGAAGTTGCTAGATCTGATGTTGGAAGATGCAAGGTTGAAACCAAATCTCAACACATATAACATGCTTATCAGAGCAAGGTGTAAGCTGGAGAATATATCAGAGGCCTGGAATGTGATAAATAAGATGACTTGTTCGGGAATGCAACCAGATGTTGTTACTTTCAATACTATAGCAACAGCTTATGCTAACACAGGACAGACTGCTCAGGCCGAAGCGATGATTTTAGAGATGCAGAGGTATGGTTTGGAACCAAACGAGAGAACTTGCACAATCATCATAACCGGATACTGTAGAGAAGGCAAAGTAAAGGAAGCTCTTAGGATTATGTATAAGATGAAGGATCTGGGCCTGCAGCCAAATCTTATTGAATTCAACTCCCTGATTAATGGCTTTGCGGGTGTGATGGATAGAGATGGTGTTGATGAGGTTTTAAAGTTGATGGAGGAATTTCATGTTCGGCCAGATGTGGTTACATATAGTACAGTAATGAATGTATGGAGCCAAGCTGGATTCTTAGAGAAATGCAAACAAGTTTACGATGACATGTTGAAATCTGGTATAAAACCAGATATACATGCTTATAGTATTCTTGCTAAAGCTTATGTTCGAGCGCAAGAAGCAGGAAAGGCAGAAGAACTGCTGAATGCGATGGTCGAATCAGGCATCCAACCAAATGTTGTTTTGTTAACAACTATCATAAGTGGATGGTGCAGTTCTAAAAGAATGGACAATGCTGTCAGAGTCTTTGACAAGATGCGTGAGTTCGGTATTTCGCCAAATCTTAAGACCTTTGAGACGCTTATCTCAGGGTATGCTGAAGCAAAACAGCCATGGAATGCAGAAGGAATGCTCCAAATAATGGAAGATTTTCACATTCCACCCAAGAAATCCACAATCATGCTTGTTGCCGATGCTTGGCGAATGGCTGGATTAAGAGAAGAGGAAAATAGGTTGCTAAGTACCATAAAAAGACTGAAAACCAAGAAGATGCCGAATTCGACAGAGGAAGATGACAATATACCAGTTGAAAGCTTGGATAAAATTTACGAAAAGCCATTTACTAGTGTTCCCTTCTGTGGTCTCTTACAGATCCCATCTATAGGTTTCAATGATCATAAAGCTTCGGCTTTCGCGACTAGAAGGAACCGAAGGCTTCTTAGAGATGGTGAATTGGAGACTTCACTTCTCACAGCAAGGTTTAAGCGTCATTCTCAAATGTATAGATTGGGAGAAGGATTTTCCATCATGTGCCAAAAGCAGTTTCAATGTCAACATGGTACATACCAACTTGCAAATTCATGTACAGCAGTATTCTACTAA 1779 0.4013 MNNIVKILNSSSQPSCAFCIDKRSCRVVRSKTKVMNFLIERGKSQEAIPMFENLIVEGHQPSLVTYTTLLNALTNQKCFKPIHSIVSQVEAKHMKPDPVFYNALINAFAESGNMDDAMKTVQKMKESGLRPTTSTYNTLIKGYGIIGKPDESTKLLDLMLEDARLKPNLNTYNMLIRARCKLENISEAWNVINKMTCSGMQPDVVTFNTIATAYANTGQTAQAEAMILEMQRYGLEPNERTCTIIITGYCREGKVKEALRIMYKMKDLGLQPNLIEFNSLINGFAGVMDRDGVDEVLKLMEEFHVRPDVVTYSTVMNVWSQAGFLEKCKQVYDDMLKSGIKPDIHAYSILAKAYVRAQEAGKAEELLNAMVESGIQPNVVLLTTIISGWCSSKRMDNAVRVFDKMREFGISPNLKTFETLISGYAEAKQPWNAEGMLQIMEDFHIPPKKSTIMLVADAWRMAGLREEENRLLSTIKRLKTKKMPNSTEEDDNIPVESLDKIYEKPFTSVPFCGLLQIPSIGFNDHKASAFATRRNRRLLRDGELETSLLTARFKRHSQMYRLGEGFSIMCQKQFQCQHGTYQLANSCTAVFY 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g03217 592 PANTHER OS01G0228400 PROTEIN 1 591 - -
Aip06g03217 592 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 308 342 IPR002885 -
Aip06g03217 592 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 378 412 IPR002885 -
Aip06g03217 592 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 1 591 - -
Aip06g03217 592 Gene3D Tetratricopeptide repeat domain 6 145 IPR011990 GO:0005515
Aip06g03217 592 Gene3D Tetratricopeptide repeat domain 146 230 IPR011990 GO:0005515
Aip06g03217 592 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 132 162 IPR002885 -
Aip06g03217 592 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 238 272 IPR002885 -
Aip06g03217 592 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 413 447 IPR002885 -
Aip06g03217 592 Pfam PPR repeat family 377 425 IPR002885 -
Aip06g03217 592 Pfam PPR repeat family 202 251 IPR002885 -
Aip06g03217 592 Pfam PPR repeat family 307 355 IPR002885 -
Aip06g03217 592 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 168 202 IPR002885 -
Aip06g03217 592 Coils Coil 461 481 - -
Aip06g03217 592 Pfam Pentatricopeptide repeat domain 84 144 IPR002885 -
Aip06g03217 592 Pfam PPR repeat 165 196 IPR002885 -
Aip06g03217 592 Gene3D Tetratricopeptide repeat domain 300 371 IPR011990 GO:0005515
Aip06g03217 592 Gene3D Tetratricopeptide repeat domain 231 299 IPR011990 GO:0005515
Aip06g03217 592 Gene3D Tetratricopeptide repeat domain 372 446 IPR011990 GO:0005515
Aip06g03217 592 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 203 237 IPR002885 -
Aip06g03217 592 TIGRFAM PPR: pentatricopeptide repeat domain 100 132 IPR002885 -
Aip06g03217 592 TIGRFAM PPR: pentatricopeptide repeat domain 310 344 IPR002885 -
Aip06g03217 592 TIGRFAM PPR: pentatricopeptide repeat domain 205 239 IPR002885 -
Aip06g03217 592 TIGRFAM PPR: pentatricopeptide repeat domain 346 379 IPR002885 -
Aip06g03217 592 TIGRFAM PPR: pentatricopeptide repeat domain 382 413 IPR002885 -
Aip06g03217 592 TIGRFAM PPR: pentatricopeptide repeat domain 135 168 IPR002885 -
Aip06g03217 592 TIGRFAM PPR: pentatricopeptide repeat domain 241 273 IPR002885 -
Aip06g03217 592 TIGRFAM PPR: pentatricopeptide repeat domain 171 204 IPR002885 -
Aip06g03217 592 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 97 131 IPR002885 -
Aip06g03217 592 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 343 377 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g03217 117 487 Glycosyltransferase AT1G05670 24.599 5.25e-43 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g03217 K17710 - gmx:100779093 879.396
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g03217 06 128139104 128142400 Aip06g03217 06 128139104 128142400 ECH