Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g03141 ATGATTCCGGAAGAAGTTAAACTTGATTTGATGCTCTTTGATCCTATCAAGCAGGCAGGAGATAAAACAGAGAAAACCCCATCGGCGCCTGGCGGTAACACACCTCCCCCACACGACCTGCCCTCTCTTTCTCTCTCTCGGCGCCGCCCTTCTACTGCTCTCTCGCCGGTATACTCCATTATCTCGTCCAATACGATATATCGCGATTCCTTCAGTGATTGGATGGGTTCATATTCTCGGGGACGCGATTTCTTGTTCTGCCAATTGTGTGGCACCATGCTCACTATCCCTCTCAGGGCTTCGGATAAATACGCTCAGTGCCCTTTGTGCAAGGCTAAGCGAAACCTCAAACATATTCGCGGAAAGGAAATAAGTTACAAAATTTCTGCTGAGGATATAAGAAGAGAACTTGGAATCAATATAATCGATGAACAGAAGGTGCAATTGTCTAAGGTCAACAAGAAATGTGATAAATGTGGTCATGGTGAAGCTACCTTCTATACCAGACAGATGAGATCAGCAGATGAAGGGCAAACCACTTTCTACACATGTATCGGTTGTGGCTTTCAGTTTCAAGAGAACTAG 585 0.4547 MIPEEVKLDLMLFDPIKQAGDKTEKTPSAPGGNTPPPHDLPSLSLSRRRPSTALSPVYSIISSNTIYRDSFSDWMGSYSRGRDFLFCQLCGTMLTIPLRASDKYAQCPLCKAKRNLKHIRGKEISYKISAEDIRRELGINIIDEQKVQLSKVNKKCDKCGHGEATFYTRQMRSADEGQTTFYTCIGCGFQFQEN 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g03141 194 ProSiteProfiles Zinc finger TFIIS-type profile. 152 192 IPR001222 GO:0003676|GO:0006351|GO:0008270
Aip06g03141 194 SMART Cys4_2 154 193 IPR001222 GO:0003676|GO:0006351|GO:0008270
Aip06g03141 194 CDD Zn-ribbon_RPA12 151 194 IPR034004 GO:0006379
Aip06g03141 194 MobiDBLite consensus disorder prediction 20 48 - -
Aip06g03141 194 SUPERFAMILY Zinc beta-ribbon 138 194 - -
Aip06g03141 194 Pfam Transcription factor S-II (TFIIS) 155 192 IPR001222 GO:0003676|GO:0006351|GO:0008270
Aip06g03141 194 ProSitePatterns Zinc finger TFIIS-type signature. 156 191 IPR001222 GO:0003676|GO:0006351|GO:0008270
Aip06g03141 194 Gene3D - 134 194 - -
Aip06g03141 194 PANTHER DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA12 81 194 - -
Aip06g03141 194 PANTHER DNA-DIRECTED RNA POLYMERASE 81 194 IPR012164 GO:0006351
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g03141 Aip-Chr6 126978638 126983159 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g03141 K03000 - zju:107420403 171.785
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g03141 06 126978638 126983159 Aip06g03141 06 126978638 126983159 ECH