Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g02623 ATGTCGAATAAACCGTACCCTCACCACTCACATCATCACTACAGTGAAAAGAAAACACTAACCCTTCAGCTTTGGCCTTTGGCTTTTGCAGAAGGTAATCAATCTCTCAGACTCTTAACAGTTAACACTCTCTCACCCCACTGTGATTTTACTACATCACCCGCTCTCCTAAACTCTCATCAATTTCCCTCTTTCAAACCCACAACCCGACCTCAATTTGTTCCATATACTCCTGAAAACCCATCTCGACCCACCCAAGAACAGGGTTCAAGAACACGAGATTACTCAACGTGCTTCAACTGTGGCAAGAAAGGTCACTGGTACAGACAATGTCCTCTTGCTCTTCACAGTAACGGTTCCTCTCCGATCCCCGATAAGATATATTGCCGCTGTGGGTACGGATTCTGCTTGGTGAAGACTTCAAAGTCTACTAAGAACTTCGGAAAGATGTTCTATGTTTGCCCAATCAAAGAGGGGAAACAGTGTAAAGGGTTTATTGGATTCTGTAATGAACCACCTAGGGATGAAGAATACTTTGATCCTCCGCCGTATAAGTACCCTGTTTGTGAGTGCGGTGCAGGGGTTTGTGCAAAAGAGAGGGACCCCAATGCTGATAGAAAGTTCCGTTTTATTTGTCCTGTTCAACCGGGACATGGAAACTGTGGATTCATTGTGACAGAGGATGAACTGCGTGGTAAGCAGCGAATTAGGGGCTTGAGTGGGAGTGGTGAATTACTTGTCGATTATCCAGAAAGCATGACAGCCATGGACATTTCCGAGGCTCCCTCCTTGAACGCCATACCTGAGGTTCCACTGGGTGACGATACATCACCAAAGGCAACGCCTCCAAGACAAGTTGGTTTAAACAAATTTGAGGTTATTGATGATGATCTTGATGCAGAAGATGTGAACTGGGATGACTTTGACAAGGAAGCGGAGTCATTCCGGTCAAGATTTGCAACAGGGCTAACTTGCCGACAAAATCTTTTCGGCAACAACAGTTTCAATGATGCTATTGGTGATAATGCACCACCAACAGGCACTTTCACATCCTATGATGAGATCTCTGATTCTGAACACCCAACTGCCGGCGATAGTCCTCCTGAATGCAATCAGTCTACCATCACTAGCCTTAATGAAGATGCACAACTTTCTTCAAGAGGTAGCGATACTACGGTTTTGGGTCAGATTTCCGGAGATGATGTTATGCAAACTGAGGTTCCTGGAGGTGTTAGTGCTATGCTAACAGTGACACAAGGCACCAAACGGAAGCTAATGTCGGAGGCCGAAAGAAGAAAGAAAATGGTGTCATATATGCTTCGTGAGTTTCTCACAGAACTCGAGGACCTGGATATTCATGATCATGACTCTATTAGAGTAGCGGTGGATGGCTGTTTTAAGATATTGCAGGAGCTTGTTCTTTCTGCTGACTATAAGCTCTTTTCTGACCATGTTTGTGACTACATCAATAATGTTTCAGCCATAGCAGAAATCGACAAGTCCATGGAGAATCGCCTCACTCTGGACGAATCCAATCGAATTATCGAAGAGGAGAAAACGAAGCTTGCACAGATCCAGGAAGAAACTGTGGAGACCGAGGCAATGCTCAAAGCATGTAACTGGAAAGGGAAAATGCTTCGCGAAGAAGTCTTGCGTATGAAGGCCGAGCTCCACGAGAAGCAGAACCAACTGAAATCTTGTGAGCTGGAGAGCGCGACGATCGAGTCTCGTCTTGGTGACTTAAAGAGAAGGAGGCTGGAAGCTGACACAAAATTGAAGGGCAGAGCTGAGGAAGCTGAATCCGCAAGGAGACTGAATGAGGAGAGACAACTGAAGCAAATGGCAGCTATGGCAGCTCTGGAGAAGCTCAAGCATCAATTACAAAACTGA 1890 0.455 MSNKPYPHHSHHHYSEKKTLTLQLWPLAFAEGNQSLRLLTVNTLSPHCDFTTSPALLNSHQFPSFKPTTRPQFVPYTPENPSRPTQEQGSRTRDYSTCFNCGKKGHWYRQCPLALHSNGSSPIPDKIYCRCGYGFCLVKTSKSTKNFGKMFYVCPIKEGKQCKGFIGFCNEPPRDEEYFDPPPYKYPVCECGAGVCAKERDPNADRKFRFICPVQPGHGNCGFIVTEDELRGKQRIRGLSGSGELLVDYPESMTAMDISEAPSLNAIPEVPLGDDTSPKATPPRQVGLNKFEVIDDDLDAEDVNWDDFDKEAESFRSRFATGLTCRQNLFGNNSFNDAIGDNAPPTGTFTSYDEISDSEHPTAGDSPPECNQSTITSLNEDAQLSSRGSDTTVLGQISGDDVMQTEVPGGVSAMLTVTQGTKRKLMSEAERRKKMVSYMLREFLTELEDLDIHDHDSIRVAVDGCFKILQELVLSADYKLFSDHVCDYINNVSAIAEIDKSMENRLTLDESNRIIEEEKTKLAQIQEETVETEAMLKACNWKGKMLREEVLRMKAELHEKQNQLKSCELESATIESRLGDLKRRRLEADTKLKGRAEEAESARRLNEERQLKQMAAMAALEKLKHQLQN 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g02623 629 ProSiteProfiles Zinc finger CCHC-type profile. 98 112 IPR001878 GO:0003676|GO:0008270
Aip06g02623 629 Pfam Zinc knuckle 97 112 IPR001878 GO:0003676|GO:0008270
Aip06g02623 629 Coils Coil 508 535 - -
Aip06g02623 629 Coils Coil 543 577 - -
Aip06g02623 629 MobiDBLite consensus disorder prediction 336 373 - -
Aip06g02623 629 Pfam GRF zinc finger 128 165 IPR010666 GO:0008270
Aip06g02623 629 PANTHER ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN 73 606 - -
Aip06g02623 629 MobiDBLite consensus disorder prediction 66 92 - -
Aip06g02623 629 Gene3D - 78 122 - -
Aip06g02623 629 SMART c2hcfinal6 97 113 IPR001878 GO:0003676|GO:0008270
Aip06g02623 629 MobiDBLite consensus disorder prediction 336 357 - -
Aip06g02623 629 PANTHER OS07G0190500 PROTEIN 73 606 - -
Aip06g02623 629 SUPERFAMILY Retrovirus zinc finger-like domains 77 115 IPR036875 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g02623 Aip-Chr6 115421941 115425236 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g02623 - - aip:107647323 1285.78