LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aip06g02589	ATGGCTTCGGCTACACTTTCTGTAGCCAAACCAGCTCTTCAGGGAAATGGTGGGAAGGGGTTCTCTGAATTCTCTGGCCTCCGCAACTCATCATCTAGCTACCTTCCTTTCTCTAGGAAGACTTCAGATGACTTCCACTCTATCATTTCATTCCAGACATCTGCAGTTGGAAGCAGTGGAGGATACAGGAAAGGTGTGACGGAAGCGAAGCTGAAGGTGGCCATAAACGGTTTTGGCAGGATTGGAAGGAACTTCTTGAGGTGCTGGCACGGCCGCAAAGACTCTCCTCTGGATGTCATTGCCATCAATGACACCGGAGGCGTCAAGCAGGCCTCTCACCTTCTCAAGTATGACTCCACCCTTGGCATATTCGACGCCGACGTTAAGCCTGTCGGTGAGGATGCCATCTCCGTTGACGGAAAGGTCATCAAAGTTGTCTCCAACCGCAACCCTGCTAACCTTCCCTGGAAGGAATTGGGAGTTGACTTGGTGATTGAAGGAACTGGGGTGTTCGTGGACAGAGAAGGTGCAGGGAAGCACATTCAGGCGGGAGCCAAGAAGGTACTGATCACAGCCCCAGGCAAAGGTGACATCCCAACCTATGTAGTTGGTGTCAATGCTGATGCTTACAGCCCAGACGAACCCATCATCAGCAACGCTTCTTGCACCACTAACTGCCTTGCTCCCTTCGTCAAGGTCCTTGACCAGAAATTCGGTATCATCAAGGGAACCATGACCACCACTCACTCCTACACCGGAGACCAAAGGCTTCTTGACGCCAGCCACCGCGACCTCAGGCGCGCGAGGGCGGCAGCGCTGAACATCGTGCCGACCTCAACCGGAGCGGCCAAGGCGGTGGCGCTTGTGTTGCCGACACTTAAGGGAAAGCTGAACGGAATTGCATTGCGTGTACCAACGCCAAACGTGTCCGTCGTTGACCTCGTTGTTCAGGTGTCAAAGAAGACGTTCGCGGAGGAAGTCAACGCTGCGTTCAGAGAGAGCGCGGAGAAGGAGCTTAACGGCATCCTCTCAGTGTGTGATGAACCACTTGTCTCCGTTGATTTCAGGTGCACCGACGTTTCATCTACCGTTGACTCTTCGTTGACCATGGTCATGGGTGATGACATGGTGAAGGTTATTGCTTGGTATGATAATGAGTGGGGTTACTCACAAAGGGTTGTGGATTTGGCTGACATTGTTGCAAACAGCTGGAAGTGA	1218	0.5271	MASATLSVAKPALQGNGGKGFSEFSGLRNSSSSYLPFSRKTSDDFHSIISFQTSAVGSSGGYRKGVTEAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVIAINDTGGVKQASHLLKYDSTLGIFDADVKPVGEDAISVDGKVIKVVSNRNPANLPWKELGVDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYSPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPTLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESAEKELNGILSVCDEPLVSVDFRCTDVSSTVDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANSWK	405

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aip06g02589	405	PANTHER	GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE	1	405	-	-
	Aip06g02589	405	Gene3D	Dihydrodipicolinate Reductase; domain 2	221	385	-	-
	Aip06g02589	405	Pfam	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain	72	173	IPR020828	GO:0051287
	Aip06g02589	405	PANTHER	GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE 2	1	405	IPR020831	GO:0016620
	Aip06g02589	405	ProSitePatterns	Glyceraldehyde 3-phosphate dehydrogenase active site.	220	227	IPR020830	GO:0016620
	Aip06g02589	405	SUPERFAMILY	NAD(P)-binding Rossmann-fold domains	70	238	IPR036291	-
	Aip06g02589	405	TIGRFAM	GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I	72	395	IPR006424	GO:0006006\|GO:0016620\|GO:0050661\|GO:0051287
	Aip06g02589	405	Gene3D	-	72	397	-	-
	Aip06g02589	405	PRINTS	Glyceraldehyde-3-phosphate dehydrogenase signature	180	193	IPR020831	GO:0016620
	Aip06g02589	405	PRINTS	Glyceraldehyde-3-phosphate dehydrogenase signature	216	234	IPR020831	GO:0016620
	Aip06g02589	405	PRINTS	Glyceraldehyde-3-phosphate dehydrogenase signature	243	259	IPR020831	GO:0016620
	Aip06g02589	405	PRINTS	Glyceraldehyde-3-phosphate dehydrogenase signature	299	316	IPR020831	GO:0016620
	Aip06g02589	405	PRINTS	Glyceraldehyde-3-phosphate dehydrogenase signature	339	354	IPR020831	GO:0016620
	Aip06g02589	405	SUPERFAMILY	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain	222	384	-	-
	Aip06g02589	405	SMART	gp_dh_n_7	71	222	IPR020828	GO:0051287
	Aip06g02589	405	Pfam	Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain	227	383	IPR020829	GO:0016620

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aip06g02589	Aip-Chr6	114374267	114376656	Transposed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aip06g02589	K05298		-	tcc:18601182	705.286

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aip06g02589	06	114374267	114376656	Aip06g02589	06	114374267	114376656	ECH