Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g02585 ATGAAGGTAGCATGTTTCTGCACCCCAGATATTAATTATGTTTATTTTGGTACCCAAAGACCAAAATTTGGTTCAAAAGAAGCACTTTTCTATCTCCAAAGGTGCTCCAATTTCAAGCATCTCAAGCAAGTTCATGGAAGAATAATCCGTTATGGCCTCACACATGATCAATTACTCATTAGGAACCTCATTCAAATTTCTTCCTCTTATGGCAAATTGAACTATGCCAAATTGGTTTTTGAGCAACTCATTTCCCCAGATACCTTCACTTGGAATGTGATGATTAGAGCATACACTAGGTTTGGTTCCCCTGAAAAAGCTCTTATTTTGTTCACTATTATGGTGTCAAAGGGCATTGAACTTGACAAGTTCACATACCCTTTTGTGATTAATGCTTGCATTGCTTCTTCAGCGACTGATTTTGGAAAAGTTGTGCAAGCTTTAGCAATCAAAATGGGGTTTTGGAATGACACCTATGTGCAGAACACTATGATGAATCTTTACTTCAAATGTGAGGATGCTGATAATGGACACAAGGTGTTCGATAAAATGCGCGTGCAGGAGGTTGTTTCTTGGACCACGGCGATTGGAGGTCTAGTTGCTTGCGGACGACTCGAGGCTGCTCGGAGATTGTTTGAGGAAATGCCTTCTAAGAATGTTGTTTCGTGGACGGCGATGATTGATGGGTATGTGAGACACCAGCAGCCAATGGAGGCCTTTGACTTGTTTGAAAGAATGCGACTTGATGGTGTGCAGCCCAACGAGTTCACCCTTGTGAGCTTGATCAAGGCTTGTGCTGAAATGGGTAGCCTCAAATTGGGTAAATGGATTCATGATTATGCTTTCAACAATGACTTCAAACTTGATCCTTTCTTGGGTACTGCTCTTATAGACATGTACAGCAAATGTGGCAGTTTAGATGATGCAAGGCAAGTTTTCGATACCATGGAGGCTAAGAACTTAGCCACGTGGAACACAATGATCACTAGCTTGGGTGTGCATGGATTGAGGAATGAAGCATTGGAACTTTTTGAGGAAATGTTGAATAATAAGTCAAATGAAGTTCCTGATGCTATCACATTTGTTGGTGTTCTGAATGCATGCCTTCAATTGAATGATCTTGAACAAGGTCAGAAGTATTTCAATCTCATGACACAACATTATGGTATAACACCTTTGTTGGAGCATTATGCATGCATGGTTCAACTCTATAGAAATGCTAATGTGCTGGATGATATTTACACATTGGATAAGACAATATCGGTGGAGAAAACAAACAACTATGTTGCAGAGTTTCTCCAAGAGAACAAGATCATTGGTGTTGATGACATAGAGGAACTCCTGCAGAAGCATTACAGGTACTTGAATTGCTTAGAAGAACAAGTTGTAGATAATTTCTCCTCAAGTTCTTCACCTTAA 1419 0.401 MKVACFCTPDINYVYFGTQRPKFGSKEALFYLQRCSNFKHLKQVHGRIIRYGLTHDQLLIRNLIQISSSYGKLNYAKLVFEQLISPDTFTWNVMIRAYTRFGSPEKALILFTIMVSKGIELDKFTYPFVINACIASSATDFGKVVQALAIKMGFWNDTYVQNTMMNLYFKCEDADNGHKVFDKMRVQEVVSWTTAIGGLVACGRLEAARRLFEEMPSKNVVSWTAMIDGYVRHQQPMEAFDLFERMRLDGVQPNEFTLVSLIKACAEMGSLKLGKWIHDYAFNNDFKLDPFLGTALIDMYSKCGSLDDARQVFDTMEAKNLATWNTMITSLGVHGLRNEALELFEEMLNNKSNEVPDAITFVGVLNACLQLNDLEQGQKYFNLMTQHYGITPLLEHYACMVQLYRNANVLDDIYTLDKTISVEKTNNYVAEFLQENKIIGVDDIEELLQKHYRYLNCLEEQVVDNFSSSSSP 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g02585 472 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 289 319 IPR002885 -
Aip06g02585 472 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 320 354 IPR002885 -
Aip06g02585 472 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 18 430 - -
Aip06g02585 472 TIGRFAM PPR: pentatricopeptide repeat domain 221 255 IPR002885 -
Aip06g02585 472 TIGRFAM PPR: pentatricopeptide repeat domain 294 320 IPR002885 -
Aip06g02585 472 TIGRFAM PPR: pentatricopeptide repeat domain 89 122 IPR002885 -
Aip06g02585 472 TIGRFAM PPR: pentatricopeptide repeat domain 190 221 IPR002885 -
Aip06g02585 472 TIGRFAM PPR: pentatricopeptide repeat domain 323 351 IPR002885 -
Aip06g02585 472 Pfam PPR repeat family 218 266 IPR002885 -
Aip06g02585 472 Pfam PPR repeat family 319 368 IPR002885 -
Aip06g02585 472 Pfam PPR repeat family 86 133 IPR002885 -
Aip06g02585 472 Gene3D Tetratricopeptide repeat domain 277 375 IPR011990 GO:0005515
Aip06g02585 472 Gene3D Tetratricopeptide repeat domain 143 276 IPR011990 GO:0005515
Aip06g02585 472 Gene3D Tetratricopeptide repeat domain 19 142 IPR011990 GO:0005515
Aip06g02585 472 Coils Coil 441 461 - -
Aip06g02585 472 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 87 121 IPR002885 -
Aip06g02585 472 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 188 218 IPR002885 -
Aip06g02585 472 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 219 253 IPR002885 -
Aip06g02585 472 Pfam PPR repeat 162 185 IPR002885 -
Aip06g02585 472 PANTHER BNAA06G32750D PROTEIN 18 430 - -
Aip06g02585 472 SUPERFAMILY TPR-like 201 349 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g02585 Aip-Chr6 114233718 114235358 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g02585 11 420 Glycoside Hydrolase AT3G49170 28.329 7.92e-52 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g02585 - - gmx:100789790 643.269