Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g02541 ATGGGTGCGAGTCGGAAGCTTCAGGGAGAGATCGATCGCGTTCTCAAGAAAGTCCAGGAAGGTGTTGAAGTCTTTGATAGTATCTGGAACAAGGTTTACGACACAGATAATGCCAACCAGAAGGAGAAGTTTGAAGCAGACCTCAAGAAGGAGATTAAGAAGCTTCAGAGGTACAGGGACCAAATTAAGACTTGGATTCAGTCCAGCGAAATCAAGGACAAGAAGGTTAGTGCATCTTATGAGCAAGCTCTAGTGGATGCCCGCAAGTTAATTGAACGTGAAATGGAAAGGTTTAAGATATGTGAAAAGGAGACAAAGACCAAAGCATTCTCTAAGGAAGGCTTAGGTCAACAGCCTAAGACTGATCCAAAAGAGAAGGCTAAATCAGAGACAAGGGATTGGTTGAACAATGTGGTTGGGGAGTTAGAATCTCAGATTGACAACTTTGAAGCTGAGCTTGAAGGGCTTTCTGTCAAGAAAGGAAAGAACAGGCCACCTAGATTGACACATCTAGAGACATCAATTACTCGGCACAAGGCTCATATAAAGAAATGTGAATTTATCTTGAGGCTATTAGACAATGATGAGTTAAGTCCGGAGCAGGTTAATGATGTCAAGGATTTCTTGGATGATTATGTAGAGCGTAATCAGGAGGACTTTGATGAATTCAGCGATGTTGATGAACTATACAGCTCATTGCCTTTAGATAAGGTGGAGACTCTTGAAGATCTTGTTACAATCCCCCCTGGCCTATCTAAGGCTACTCCTAGTCTCAGCTTGAAGAATACTTTGGCTGTTTCAGCATCACAATCAGCATCAGCATCTGCCTCACAAACATCTGAGCAAGCTGATGACACAGCATCCCAGGATAGCAATTCTGATATTGGTGCAAGAACTCCACCTGCGAAAGTTAGTGGAATTATTTCTGCTACTTCCACACCAGCTGGCAACCATGCTACTCCTCTTTCTGTGAATGTTTCTACGCATAATTTGTCCAGTGCACCAGCTGCTGGATCGGTCCTTTCTGGTTCGAATTCAGTTCGGAGTCCCATGGAGAATGCTAATGCTGCGAATTCACCTTCTGCGAATCAATCTTCCTCTTTGAAGGAAGAAGAGATTAATAGTTTCCCTGACCAGAGACCATCCCCATCGCTTTCTGATGCAGCACTAAGGAGCATTGGCCGAAACAACATTTCAAATCAAGCAGCAGCTAGCATCCCTCTTGGTGCTGGGAACATGGTTTCTAACAATGGAACCCTTGGTTCAGTCCCTTCAGCCTCTGAAATAACTAAGAGGAACATGTTGGCAGCTGATGATAGACTTGGTGGAAGTAGTGGGATGGTGCAGCCTCTTGTATCCCCATTAAGTAATAGCAGATTGATCTTGCCTCAGGTTGGGAAGGCTAATGAAGCTGCCTCAGCTGACTCTAATGTCATTAATGAGGCTGCAGCTGTATCTAGTAGAGTTTTTTCCCCATCTGTGGTTCCTGGCATGCAATGGAGACCTGGAAGTCCATTCCAGAACCAAAGTGATGCGATTCGTCAAAGAACTGAAATAGCTCCAGATCAAAGGGAAAAGTTTTTGCAGAAGTATCAGCAAGTGCAGCAGCAGGGGCACAGCACCCTGCTTACTATGCCTTCTCTTGGAGGAAATCCTAAGCAGTTTTCTGCCCAGCAGCAAAATCCACTTTTGCAACAGTTTAACTCCCAAGGTTCCTCTGTTTCTTCTCAATCTGCTATTGGCCTTGGAGTCCAGTCACCAGGTTTTAGTGGTATTTCAACTACTACACTACAACAGCCACCCAATTCGGTCCATTCCCCATCTAGTCAACAGTCATTGATGTCAGGTGTTTCCAAAGATGCAGATGTTGGCAATTCTAAAATTGAAGATCCACAACATCAGAATTTTCCTGATGATTCAGCTGTTGAATCTACTGGTAGTACTGGGGTTGGCAAGAGTCTCATAAGTGAAGATGATTTGAAATCAACATTTGCTGCAGATTCTCCAGCAGGGGTATCCGTCTCCCTTGCAGAAACTGGTCAAACATCCAGAGATATTGATTTGTCTCCTGGCCAACCTTTACAACCCAATCAACCTACTGGTAACCTTGGTGTCATTGGGAGAAGAAATGGCATGGATCTTGGAGCCATTGGTGATAGTTTCACGGGATCAAGTTCAAGTATTAATCCAAGTGGAGTGCGTGATCAGTTATACAATTTGCAAATGCTTGAGGCAGCACACTACAAACTTCCTCTACCCAGAGACTCAGAACGTCCTAGAGCTTATACTCCTAGGCACCCAACGATAACACCTTCTAGTTATCCTCAGACACAGGCTCCTATTGTTAATAATCCTGCTTTTTGGGAGAGAGTAGGTCTTGAACCATTTGGCACTGATACATTGTTCTATGCATTTTATTATCAACAGAACACTTACCAGCAGTATTTGGCTGCAAAGGAACTAAAGAAACAGTCCTGGAGATACCACAAAAAGTATAACACATGGTTTCAGCGTCATGAAGAGCCCAAAGTTGCTACAGATGAATATGAGCAAGGAACATATGTGTACTTCGATTTCCATATTGCAAATGATGACCTTCAACATGGGTGGTGTCAAAGAATCAAAACTGAATTCACTTTTGAATATAATTATCTTGAAGACGAGCTTCTTGTATAG 2676 0.4335 MGASRKLQGEIDRVLKKVQEGVEVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNVVGELESQIDNFEAELEGLSVKKGKNRPPRLTHLETSITRHKAHIKKCEFILRLLDNDELSPEQVNDVKDFLDDYVERNQEDFDEFSDVDELYSSLPLDKVETLEDLVTIPPGLSKATPSLSLKNTLAVSASQSASASASQTSEQADDTASQDSNSDIGARTPPAKVSGIISATSTPAGNHATPLSVNVSTHNLSSAPAAGSVLSGSNSVRSPMENANAANSPSANQSSSLKEEEINSFPDQRPSPSLSDAALRSIGRNNISNQAAASIPLGAGNMVSNNGTLGSVPSASEITKRNMLAADDRLGGSSGMVQPLVSPLSNSRLILPQVGKANEAASADSNVINEAAAVSSRVFSPSVVPGMQWRPGSPFQNQSDAIRQRTEIAPDQREKFLQKYQQVQQQGHSTLLTMPSLGGNPKQFSAQQQNPLLQQFNSQGSSVSSQSAIGLGVQSPGFSGISTTTLQQPPNSVHSPSSQQSLMSGVSKDADVGNSKIEDPQHQNFPDDSAVESTGSTGVGKSLISEDDLKSTFAADSPAGVSVSLAETGQTSRDIDLSPGQPLQPNQPTGNLGVIGRRNGMDLGAIGDSFTGSSSSINPSGVRDQLYNLQMLEAAHYKLPLPRDSERPRAYTPRHPTITPSSYPQTQAPIVNNPAFWERVGLEPFGTDTLFYAFYYQQNTYQQYLAAKELKKQSWRYHKKYNTWFQRHEEPKVATDEYEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDELLV 891
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g02541 891 Pfam NOT2 / NOT3 / NOT5 family 748 885 IPR007282 GO:0006355
Aip06g02541 891 Coils Coil 41 61 - -
Aip06g02541 891 MobiDBLite consensus disorder prediction 637 652 - -
Aip06g02541 891 PIRSF NOT_su_3_5 1 891 IPR012270 GO:0006355|GO:0030015
Aip06g02541 891 MobiDBLite consensus disorder prediction 591 619 - -
Aip06g02541 891 MobiDBLite consensus disorder prediction 271 298 - -
Aip06g02541 891 MobiDBLite consensus disorder prediction 334 387 - -
Aip06g02541 891 Gene3D - 731 886 IPR038635 -
Aip06g02541 891 MobiDBLite consensus disorder prediction 271 302 - -
Aip06g02541 891 Pfam Not1 N-terminal domain, CCR4-Not complex component 4 236 IPR007207 GO:0005634|GO:0006355
Aip06g02541 891 MobiDBLite consensus disorder prediction 110 131 - -
Aip06g02541 891 Coils Coil 132 159 - -
Aip06g02541 891 PANTHER CCR4 NOT-RELATED 1 891 IPR040168 GO:0030015
Aip06g02541 891 MobiDBLite consensus disorder prediction 591 652 - -
Aip06g02541 891 PANTHER BNAA10G16600D PROTEIN 1 891 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g02541 Aip-Chr6 112581332 112588899 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g02541 K12580 - gmx:100785965 1414.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g02541 06 112581332 112588899 Aip06g02541 06 112581332 112588899 ECH