Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g02473 ATGGAAATAGCTGTTTCTCCACAAACACAGAAGCAGAATTTGCCAACAGGTGGTCGCAAAACTTCAGCTGCCGGATCCCAGAAAGATCTCTGGTTTGTTGTGCGAGAAGGATCGGTAAATGAATTAGAGACGGTCTTGACATTATTGAAGAAGAGTGGGGGTAATATCAATGTGAGGAACTCCTTTGGGCTGACTCCTCTTCATCTTGCAATTTGGAGAAATCACATTCCCATTGTCAGGAGGCTTCTTGCAGCTGGTGCAGATCCTGATGCTCGAGATGGCGAATCAGGATGGGGTAGCCTTCATAGGGCTCTACATTTTGGTCATCTTGCTGTGGCAAGTGTCCTTCTACAGCATGGTGCTTCTATTACATTGGAGGATTCAAGATCTCGAGTACCTGTAGATCTTCTATCTGGTCCTGTGTTACAGGTTTCTGGAAATGATCGCAAGTCAGTGGCTACTGAGGTCTTTAGTTGGGGAAGCGGTGCAAATTATCAGCTTGGAACTGGAAATGCCCACATTCAAAAGTTACCTTGCAAAGTTGATTCACTTAATGGTTCATTCATAAAGCTGATCTCTGCAGCAAAGTTCCACAGTGTGGCACTTACTGCGCGTGGAGAAGTTTATACTTGGGGATTTGGAAGGGGGGGCCGTCTAGGGCACCCTGATTTTGACATACACAGTGGTCAAGCTGCTGTCATCACTCCCCGCCAGGTGACTACTGGTCTGGGTTCCCGCAGAGTGATGGCAATCGCTGCAGCTAAGCATCATACTGTTATTGCTACTGAGGGTGGGGAAGTGTTCACTTGGGGATCCAATAGAGAGGGACAGCTGGGATACACTTCTGTTGATACACAACCAACACCTCGGAGAGTGAGTGCTCTAAGGTCAAAAATTGTTGCTGTTGCTGCAGCAAACAAGCACACAGCTGTAGTTTCTGATTTAGGTGAAGTTTTTACCTGGGGTTCAAATAGAGAGGGCCAGCTTGGGTATGGAACCTCAAACTCAGCATCTAATTACACCCCACATGTGGTTGAATCCTTGAAGGGAAAGACTTTAACCAAGGTTTCTGCTGCAAAATATCACACAGTTGTATTAGGATCTGACGGAGAGGTGTACACTTGGGGTTATCGACTAGTTACTCCAAAACGTGTAGTGATTTCTAGGAACTTGAAAAAGTGTGGGAGCACTCCTTTAAAGTTTCATCGAATGGAACGACTTCAGGTAGTTTCTATAGCTGCGGGAATGGTACACAGCATGGCACTCACAGATGACGGTGCATTATTTTATTGGGTCTCATCTGATCCCAATCTCAGATCCCAACAGCTATATTCTATGTGCGGAAGAAATATGGTGAGCATATCTGCTGGAAAGTACTGGACTGCTGCAGTTACGGGTACTGGTGATGTTTACCTGTGGGATGGGAAGAAAAGTAAGGATAAACCACTTGTTGCAACTCGGTTGCATGGTGTAAAGAAGGCTACTTCGGTTTCTGTTGGTGAAACACATTTACTAATAGTGGCTACGCTGTACCATCCTGAATATCCTCTCACTGGTGTTGAGGACTCGCAAAAACCCAAGTTAAATAATAGGGATGATATGGATGAGTTAAATGAAGACATTTTATTTGATGACATGGAATCAAATAATATGGTATCCAGTGTACAAAATGATACTTTTGGGCAGAAATCTGTACCTAGCTTAAAAAGCCTTTGTGAAAAAGTAGCAGCAGAATGTTTAGTGGAGCCACGAAATGCCATACAACTGCTGGAGATTGCCGATTCTCTTGGGGCAGATGAATTGAGAAAGTATTGTGAGGAGATTGTGATGCGCAACCTTGATTTTATATTCACAGTTTCATCGCATGCTGTGGCAAGCACAGCACCAGATATTCTGGCTAACCTTGAGAGGTTGTTGGACCAGAGATCTTCTGAGCCTTGGACACACCGTCGCCTCCCAACTCCTACTGCAACCTTCCCTGCCATCATCAACAGTGAAGAGGATGATAGTGAGATAGAGTTTCAAAGGACTCGCGATAAACCCATGAAAATGAATGTGTTGAAATTGGAGAAAGATGAAAGAGGAGATTCCTTTCTACAGCCCAAGGATGACCCCAATCTAGAAACCTCCAAGGTAATTCGGGCAATAAGAAAGAAGCTGCAGCAGATTGAGATGCTTGAAGCTAAGCAATCTAGTGGACATTTCCTCGATGACCAGCAGATCTTAAAGATCCAATCCAAGTCTTCCCTCGAGAGCTCGCTTGCAGAACTAGGTATTTCTGTTGAGACTTTGCAAAATAAGGAATCATCTTCTCCGTCACCATCGCCAGAAGGCAAAGGTAGTAAAAAGGGTAAAGTATCCAAAAAACAGAGGAGAAAGAGCAATAAATCAAGTGTTATCCAAGCAGAGGTAGAATCTTTGTATTCTGCAAGTGAAGTGATTACTGAATCTGTGAAGGATTTGTTGGAAGCTGACATCATGGTGGCTCCTAAGTCTAAGGTGGGAGAGGTTGCTGAAGAAACCACAACCGACCAAGGTGCAACTGCAAAAGATCTAGACCTGATAGTGCAGAAGAAAGATGGTATAGAGTTGCTGCAAGGCAAGGGACAAACACCAAAAGTTTCTAAGAAGAAGAATAAGAAGGGTGGGCTATCAATGTTTTTGAGTGGAGCCCTTGATGATGTTCCAGAGGAGGTGAACCCTCCTCCTACACCAATGCCAAGGAACGAGGGTCCTGCATGGGGTGGGGCAAAGTTTACGAAGGGTTCTGCTTCACTTCGTGATATCCAGGATGAACAGAGCAAAATAAAGGGAAACCAGCTATCTATGACTAAATCTAAGGTTGAAGATCTTTCTGATTTTGGCAGTAGCGGAAAAGTGAAGTTGAGTTCATTTCTTCCTTCTAGTCCAATACCTGTTGTCCCTGCTGCCCCAACGCGTGGTTCACATGTATCTGATGCCGACATAAGTACACCTCCGTGGGTTGCTTCAGGAACCCCTCCTCAACTTCGGCCATCATTCAGGGACATCCAAATGCAACAGGGAAAGAAACACCAAAGCGTTTCCCACAGTCCTAAGACTAGCACAGCTGGATTCACCATTGCAACAGGTCAAGGCTCACCATCCGAGTCGACCTTGGTGAGCCGCTGGTTCAAGCCTGAAGTGGACACACCATCCTCAATTCGTTCCATTCAGATTGAAGAAAAGGCCATGAAGGATCTCAAGCGCTTCTACAGTAGTGTGAAGATAGTAAGGAAGCAATCTTAA 3267 0.4493 MEIAVSPQTQKQNLPTGGRKTSAAGSQKDLWFVVREGSVNELETVLTLLKKSGGNINVRNSFGLTPLHLAIWRNHIPIVRRLLAAGADPDARDGESGWGSLHRALHFGHLAVASVLLQHGASITLEDSRSRVPVDLLSGPVLQVSGNDRKSVATEVFSWGSGANYQLGTGNAHIQKLPCKVDSLNGSFIKLISAAKFHSVALTARGEVYTWGFGRGGRLGHPDFDIHSGQAAVITPRQVTTGLGSRRVMAIAAAKHHTVIATEGGEVFTWGSNREGQLGYTSVDTQPTPRRVSALRSKIVAVAAANKHTAVVSDLGEVFTWGSNREGQLGYGTSNSASNYTPHVVESLKGKTLTKVSAAKYHTVVLGSDGEVYTWGYRLVTPKRVVISRNLKKCGSTPLKFHRMERLQVVSIAAGMVHSMALTDDGALFYWVSSDPNLRSQQLYSMCGRNMVSISAGKYWTAAVTGTGDVYLWDGKKSKDKPLVATRLHGVKKATSVSVGETHLLIVATLYHPEYPLTGVEDSQKPKLNNRDDMDELNEDILFDDMESNNMVSSVQNDTFGQKSVPSLKSLCEKVAAECLVEPRNAIQLLEIADSLGADELRKYCEEIVMRNLDFIFTVSSHAVASTAPDILANLERLLDQRSSEPWTHRRLPTPTATFPAIINSEEDDSEIEFQRTRDKPMKMNVLKLEKDERGDSFLQPKDDPNLETSKVIRAIRKKLQQIEMLEAKQSSGHFLDDQQILKIQSKSSLESSLAELGISVETLQNKESSSPSPSPEGKGSKKGKVSKKQRRKSNKSSVIQAEVESLYSASEVITESVKDLLEADIMVAPKSKVGEVAEETTTDQGATAKDLDLIVQKKDGIELLQGKGQTPKVSKKKNKKGGLSMFLSGALDDVPEEVNPPPTPMPRNEGPAWGGAKFTKGSASLRDIQDEQSKIKGNQLSMTKSKVEDLSDFGSSGKVKLSSFLPSSPIPVVPAAPTRGSHVSDADISTPPWVASGTPPQLRPSFRDIQMQQGKKHQSVSHSPKTSTAGFTIATGQGSPSESTLVSRWFKPEVDTPSSIRSIQIEEKAMKDLKRFYSSVKIVRKQS 1088
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g02473 1088 ProSiteProfiles Ankyrin repeat region circular profile. 62 93 - -
Aip06g02473 1088 MobiDBLite consensus disorder prediction 1004 1046 - -
Aip06g02473 1088 MobiDBLite consensus disorder prediction 1 23 - -
Aip06g02473 1088 ProSiteProfiles Ankyrin repeat region circular profile. 96 127 - -
Aip06g02473 1088 Pfam Ankyrin repeats (3 copies) 42 127 IPR002110 GO:0005515
Aip06g02473 1088 PRINTS Chromosome condensation regulator RCC1 signature 155 171 IPR000408 -
Aip06g02473 1088 PRINTS Chromosome condensation regulator RCC1 signature 189 202 IPR000408 -
Aip06g02473 1088 PRINTS Chromosome condensation regulator RCC1 signature 208 224 IPR000408 -
Aip06g02473 1088 PRINTS Chromosome condensation regulator RCC1 signature 265 281 IPR000408 -
Aip06g02473 1088 PRINTS Chromosome condensation regulator RCC1 signature 302 318 IPR000408 -
Aip06g02473 1088 PRINTS Chromosome condensation regulator RCC1 signature 318 332 IPR000408 -
Aip06g02473 1088 PRINTS Chromosome condensation regulator RCC1 signature 415 433 IPR000408 -
Aip06g02473 1088 SUPERFAMILY Ankyrin repeat 40 136 IPR036770 -
Aip06g02473 1088 MobiDBLite consensus disorder prediction 763 777 - -
Aip06g02473 1088 MobiDBLite consensus disorder prediction 965 1046 - -
Aip06g02473 1088 ProSiteProfiles Ankyrin repeat profile. 62 94 IPR002110 GO:0005515
Aip06g02473 1088 Gene3D - 120 390 IPR009091 -
Aip06g02473 1088 Gene3D - 391 510 IPR009091 -
Aip06g02473 1088 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 206 264 IPR000408 -
Aip06g02473 1088 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 265 315 IPR000408 -
Aip06g02473 1088 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 1 1087 - -
Aip06g02473 1088 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 154 205 IPR000408 -
Aip06g02473 1088 PANTHER ANKYRIN REPEAT FAMILY PROTEIN / REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN 1 1087 - -
Aip06g02473 1088 Pfam Regulator of chromosome condensation (RCC1) repeat 316 366 IPR000408 -
Aip06g02473 1088 Pfam Regulator of chromosome condensation (RCC1) repeat 155 202 IPR000408 -
Aip06g02473 1088 Pfam Regulator of chromosome condensation (RCC1) repeat 265 312 IPR000408 -
Aip06g02473 1088 Pfam Regulator of chromosome condensation (RCC1) repeat 206 260 IPR000408 -
Aip06g02473 1088 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 370 425 IPR000408 -
Aip06g02473 1088 ProSiteProfiles Ankyrin repeat profile. 96 128 IPR002110 GO:0005515
Aip06g02473 1088 MobiDBLite consensus disorder prediction 889 919 - -
Aip06g02473 1088 SMART ANK_2a 62 91 IPR002110 GO:0005515
Aip06g02473 1088 SMART ANK_2a 96 125 IPR002110 GO:0005515
Aip06g02473 1088 Gene3D - 7 119 IPR036770 -
Aip06g02473 1088 MobiDBLite consensus disorder prediction 763 800 - -
Aip06g02473 1088 SUPERFAMILY RCC1/BLIP-II 120 431 IPR009091 -
Aip06g02473 1088 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 316 369 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g02473 Aip-Chr6 110380242 110388880 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g02473 35 136 Acyl Lipid Metabolism Gene Families AT5G53470 38.235 8.40e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g02473 K24810 - gmx:100800604 1674.06