Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g02472 ATGCAGACTAGGACGGTTCAAGTGAAGCAACTCTCAGATCTAGCCGGTGAGAGAGAGATTCACGAGTTCTTCTCTTTCTCCGGAGAAATTGAGCACATTGAGATCTTGAGTGAACATGGGAAATCAAAGACTGCATTTGTGACATTTAAAGACCCCAAAGCACTTGAAATTGCATTATTGTTATCAGGAGCAACAATAGTAGACCAGATTGTGAGTATAACACCAGCTGAGAACTATGTACTGAATTCTGAGTTGCAGGAAGTACAAAAGGTGGAAAATGCTGTAAGTGTAGCACCATCCGGAGATGTTATGCTGAATAGCGAGGAGGGGAAAACCAGCCCCACTAATGGAAGAATGTACCTTAATAGAGCACAGGATGTAGTTACGAATATGCTGGCAAAAGGTTCAGCAATCAGACAAGATGCCGTTAATAAAGCTAAAGCATTTGACGAAAAGCATCAGTTAACTGCTAATGCATCGGCAAAGGTCATTTCCTTTGACAAGAGAGTTGGACTCACAGAAAAGTTGACAGTTGGCATTTCTGCAGTGAATGAGAAAGTGAAGAGCGTGGATCAGAAGCTTCATGTTTCCGATAAAACGATGGCAGCGATATTCGCAGCTGAGAGGAAGTTGAATGATACAGGATCAGCTGTCAAAACTAGCAGGTATGTGACTGCCGGAACGGCATGGTTAAATGGTGCTTTTAGCAAGGTGGCGAAAGCCGGACATGTTGCCAGTACTAAAACAAGAGAAAAGTTTCATTTCGCTGTTTCAAACTTGACTGCTAAGGAACCTTCCGTGGCTGCTTAG 810 0.4309 MQTRTVQVKQLSDLAGEREIHEFFSFSGEIEHIEILSEHGKSKTAFVTFKDPKALEIALLLSGATIVDQIVSITPAENYVLNSELQEVQKVENAVSVAPSGDVMLNSEEGKTSPTNGRMYLNRAQDVVTNMLAKGSAIRQDAVNKAKAFDEKHQLTANASAKVISFDKRVGLTEKLTVGISAVNEKVKSVDQKLHVSDKTMAAIFAAERKLNDTGSAVKTSRYVTAGTAWLNGAFSKVAKAGHVASTKTREKFHFAVSNLTAKEPSVAA 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g02472 269 SMART rrm1_1 5 74 IPR000504 GO:0003723
Aip06g02472 269 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 1 269 - -
Aip06g02472 269 Gene3D - 1 74 IPR012677 -
Aip06g02472 269 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 4 78 IPR000504 GO:0003723
Aip06g02472 269 PANTHER RNA BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN-RELATED 1 269 - -
Aip06g02472 269 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 66 IPR000504 GO:0003723
Aip06g02472 269 SUPERFAMILY RNA-binding domain, RBD 2 81 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g02472 Aip-Chr6 110293724 110297126 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g02472 - - gmx:100779011 441.039
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g02472 06 110293724 110297126 Aip06g02472 06 110293724 110297126 ECH