Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g02384 ATGCAAGGCTTCCCTTCTGAAGGTGAAAATGCTTTGTCAGTTGTTGGTCCAAAGCCAATGGAATGGTCTACTGTTCCATACAGTGGTCCTCAAGTTCCTGGACCAAATGGAAAGAAGCGGACATCAAGTTTGGAATCGCCAATCATGTTGCTGACAGGTCACCAGAGTGCTATCTATACCATGAAGTTCAATCCATCAGGATCAGTCATTGCGTCTGGATCTCACGACAGAGAGATTTTCCTCTGGAATACGTATGGGGAATGCAAGAACTTTATGGTTCTAAAGGGTCACAAAAATGCAGTTTTAGACCTTCATTGGACTACAGATGGAACTCAGATAGTTTCTGCCAGCCCTGATAAAACTCTGAGGGCTTGGGATGTGGAAACAGGAAAACAAATTAAAAAGATGGTAGAGCATCTTTCATATGTCAATTCATGTTGTCCTTCGCGGAGGGGTCCGCCTCTTGTTGTCAGCGGATCAGACGATGGAACTGCTAAACTATGGGATATGCGTCAAAGGGGTTCCATCCAAACATTCCCAGATAAATACCAGATTACAGCTGTTAGCTTCTCCGATGCATCAGATAAGATCTATACCGGTGGTATTGATAATGATGTCAAGTTGAGTCCTGATGGTTCTTACCTTCTAACTAATGGCATGGATTGCAAGCTCTGCATTTGGGATATGCGCCCATACGCCCCCCAAAATCGCTGTGTAAAGGTGTTGGAAGGGCACCAACACAACTTTGAAAAGAACTTGTTGAAGTGCAATTGGTCATCCGATGGAAGCAAGGTCACAGCAGGGAGTTCGGATCGAATGGTTTATATATGGGATACCACGTCGCGACGCATCTTATATAAGCTTCCTGGGCACAATGGATCTGTTAATGAGTGTGTGTTTCACCCCAACGAACCTATTATTGGATCTTGCAGTAGCGACAAGCAGATCTATCTTGGAGAGATATGA 966 0.4441 MQGFPSEGENALSVVGPKPMEWSTVPYSGPQVPGPNGKKRTSSLESPIMLLTGHQSAIYTMKFNPSGSVIASGSHDREIFLWNTYGECKNFMVLKGHKNAVLDLHWTTDGTQIVSASPDKTLRAWDVETGKQIKKMVEHLSYVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGSIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKVLEGHQHNFEKNLLKCNWSSDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHNGSVNECVFHPNEPIIGSCSSDKQIYLGEI 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g02384 321 PANTHER U5 SMALL NUCLEAR RIBONUCLEOPROTEIN 40 KDA PROTEIN 207 321 - -
Aip06g02384 321 ProSiteProfiles Trp-Asp (WD) repeats profile. 258 287 IPR001680 GO:0005515
Aip06g02384 321 PANTHER U5 SMALL NUCLEAR RIBONUCLEOPROTEIN 40 KDA PROTEIN 34 207 - -
Aip06g02384 321 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 51 83 - -
Aip06g02384 321 SMART WD40_4 235 278 IPR001680 GO:0005515
Aip06g02384 321 SMART WD40_4 129 169 IPR001680 GO:0005515
Aip06g02384 321 SMART WD40_4 87 126 IPR001680 GO:0005515
Aip06g02384 321 SMART WD40_4 44 83 IPR001680 GO:0005515
Aip06g02384 321 SMART WD40_4 191 228 IPR001680 GO:0005515
Aip06g02384 321 SMART WD40_4 281 320 IPR001680 GO:0005515
Aip06g02384 321 ProSitePatterns Trp-Asp (WD) repeats signature. 265 279 IPR019775 -
Aip06g02384 321 PRINTS G protein beta WD-40 repeat signature 113 127 IPR020472 -
Aip06g02384 321 PRINTS G protein beta WD-40 repeat signature 70 84 IPR020472 -
Aip06g02384 321 PRINTS G protein beta WD-40 repeat signature 156 170 IPR020472 -
Aip06g02384 321 ProSiteProfiles Trp-Asp (WD) repeats profile. 94 135 IPR001680 GO:0005515
Aip06g02384 321 PANTHER U5 SMALL NUCLEAR RIBONUCLEOPROTEIN 40 KDA PROTEIN 34 207 - -
Aip06g02384 321 Gene3D - 43 321 IPR015943 GO:0005515
Aip06g02384 321 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 94 131 - -
Aip06g02384 321 CDD WD40 51 318 - -
Aip06g02384 321 ProSitePatterns Trp-Asp (WD) repeats signature. 156 170 IPR019775 -
Aip06g02384 321 PANTHER U5 SMALL NUCLEAR RIBONUCLEOPROTEIN 40 KDA PROTEIN 207 321 - -
Aip06g02384 321 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 288 321 - -
Aip06g02384 321 ProSiteProfiles Trp-Asp (WD) repeats profile. 206 230 IPR001680 GO:0005515
Aip06g02384 321 ProSitePatterns Trp-Asp (WD) repeats signature. 113 127 IPR019775 -
Aip06g02384 321 ProSiteProfiles Trp-Asp (WD) repeats profile. 51 83 IPR001680 GO:0005515
Aip06g02384 321 ProSiteProfiles Trp-Asp (WD) repeats profile. 155 178 IPR001680 GO:0005515
Aip06g02384 321 ProSiteProfiles Trp-Asp (WD) repeats profile. 288 321 IPR001680 GO:0005515
Aip06g02384 321 Pfam WD domain, G-beta repeat 131 169 IPR001680 GO:0005515
Aip06g02384 321 Pfam WD domain, G-beta repeat 47 83 IPR001680 GO:0005515
Aip06g02384 321 Pfam WD domain, G-beta repeat 89 126 IPR001680 GO:0005515
Aip06g02384 321 Pfam WD domain, G-beta repeat 284 318 IPR001680 GO:0005515
Aip06g02384 321 Pfam WD domain, G-beta repeat 198 228 IPR001680 GO:0005515
Aip06g02384 321 Pfam WD domain, G-beta repeat 237 278 IPR001680 GO:0005515
Aip06g02384 321 SUPERFAMILY WD40 repeat-like 48 318 IPR036322 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g02384 51 316 Miscellaneous Gene Families AT5G08390 23.420 4.60e-17 80.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g02384 K12857 - gmx:100803276 633.254