Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g02348 ATGTTAGCATGCCCTAGCACTAACACCTTCCATGGTGGAGCCACGCTCCACCACCACCACCAACACCGCCGTTCTCAGCCTCCTTGCTTGTTCCTCCCTTTCCGACCTCACTTTGGCTTTGCTAAGGAAGGAAAATGCCGCTCCCGCTCTCTCTCCCTCCTGTTCTCCGGCAACAACAACCGTAACGGCTTTGCTGTCAGAGCTTCCACGGAACCGTCGGACGATAAGAACAGCGATGGCGCCACCCACATTGCGCCGCAACCGTACTCCGTGAAGATTCCTGTTGGCGATAGACATATTTTGGTTGAGACTGGTCATATAGGAAGACAAGCCAGTGCGTCAGTTACAGTTACAGATGGCGAGACAATTGTGTATACTTCTATATGTTTGGATGATGCTGCTAGTGAGCCATCTGATTTTTTTCCTCTTTCTGTGAATTATCAAGAGCGTTTTTCAGCAGCTGGTCGCACTAGTGGAGGGTTCTTCAAGCGAGAAGGAAAGGCAAAGGATCATGAGGTTCTTACTTGTAGATTGATAGATAGGCCTCTTCGTCCTACAATGCCTAAGGGCTTCTACCATGAAACTCAAATACTGTCTTGGGTTTTAAGCTATGACGGATTGCATTCCCCTGATTCCTTGGCGGTCACTGCCGCTGGTATAGCAGTTGCACTTTCAGAAGTTCCAGTATCAGAAGTAGTTGCTGGAGTTCGAGTTGGCCTTGTTGGTGATAAGTATATAGTAAATCCTACAACCGAGGAGATGGAAACGTCTGAGTTGGACCTTGTGCTGGCTGGAACAGATAGTGCAATATTGATGATTGAGGGCTATAGCAATTTGCTTCCAGAAGAGAAGTTACTTAAAGCTGTAGAAGTTGGTCAGGATGCAGTGCGAGCAATCTGTAAGGAAGTAGAAGCTTTGGTTAAGAAGTGTGGGAAACCAAAGATGTTTGACGCAATCAAGCTACCTCCTCCTGAGCTTTATAAATATGTTGAAGAAATTGCTGGTGATGAGTTGCTAAAAGTTCTTCAAATTAGAAACAAAATACCAAGAAGGAAAGCCATTTCAGCATTAGAAGACAAGGTTCTGAAGATACTTACAGAAAATGGGTTTGTCAGTAATGACCCAACATTAAGGAGTAATGCTGAAACTATCGCGGAGATTCTTGAGGAGGAGGATGAAGATGAGGAAGTGATTGTTGATGGTGAAGTTGATGAAGGTGATGTTCATATAAAGCCAACTTCACCCAGACCAACTCGTTTGTTTGCTGAGGTAGATGTAAAGTTGGTATTTAAAGAAGTTTCATCCAAGTTTTTGAGGAAGCGCATTGTAGAGGGGGGAAGACGGAGTGATGGGCGAACACCAAATGGAATACGTCCAATCAATGCAAGGTGTGGGCTACTACCTAGAGCACATGGAAGTGCTCTTTTTACAAGAGGCGAAACACAGTCAGTCGCTGTTGTTACTCTTGGAGATAAGCAAATGGCGCAAAGAATAGACAATCTTATAGATGTTGAAGAATACAAGAGGTTCTATCTTCAGTATTCATTTCCTCCTTCAAGTGTTGGGGAAGTTGGCCGAATTGGTGCACCAAGTAGAAGAGAAATTGGACACGGGATGCTTGCAGAGAGATCACTTGAACCAATTTTGCCTCCAGAGGATGATTTCCCTTACACTATACGTGTTGAGAGTACTATCACAGAAAGCAATGGCTCATCAAGCATGGCTTCTGTCTGTGGGGGTTGCTTAGCATTGCAAGATGCTGGGGTTCCTATTAAGTGCTCTATTGCTGGCATTGCCATGGGTTTGGTACTGGACACCAAGGAATTTGGTGGTGATGGAACTCCACTGATTCTGTCCGACATAACTGGATCTGAAGATGCTTCCGGAGATATGGATTTCAAGGTTGCTGGAAACGAAGATGGTATAACTGCATTTCAGATGGACATTAAGGTAGGAGGAATTACTTTGCCCATCATGAGAGAGGCACTCCTACAGGCTAGAGAGGGCAGGAAGCATATACTTGGGGAAATGATGAAATGCTCACCCCCTCCAGCAAAAAGTCTTTCCAAGCACGCACCATTAATTCACATAATGAAGGTCCAACCTGAGAGAATAAATCTAATAATTGGTTCTGGTGGAAAAAAAGTGAGGAGCATTATTGAAGAATCTGGAGTAGAGGCTATTGATACAGAAGATGATGGCACTGTGAAAATAACTGCAAAAGATTTGTCTTGTTTGGAGAGGTCTAAAGCGATGATTAGTAGTTTGACAATGGTTCCAACTATTGGTGATATATATAGGAACTGTGAAATTAAGTCCATAGTTCCATATGGAGCTTTTGTAGAGATAGCACCTGGACGAGAGGGACTGTGCCATGTTAGTGAACTTAGTTCAGGTTGGCTAGCCAAGCCAGAAGATGCTTTCCAAGTGGGAGACCGCATTGATGTAAAGCTTATAGAGATAAATGATAAGGGACATCTGCGACTTAGCCACCGAGCAATGCTTCCTGCTACAGAATCAGAAAATTCAAATAGTCAGCCTACTAGTGAACTCCCCATAGATACTGCAGAATTACAAAAATCAACTGACAAGGGTTCGTCAAAAAAAGTTAATAGCTTGGCAAAAGATGGTTTAGCCGAAGGGAAGAGTAAGCAGCCTAGGGATAAGATTGGCAAAGTCAGAGTCTCATCTAAAAGGAGTGCAGAGGACGATTCTGTAATTCCCTCAAAAAAGTTTATCAGGAAATTGGTTAGCCCTTCCGAGGATAAGCCTTCCACGAACAAAGATGATGTAAAGAGGAGTAACAATGAAGCATTTGGTAGTGTCTCTGGCAAAGATGAAAATAGTTTGGTTAGTGGAGAGGCATGA 2868 0.4376 MLACPSTNTFHGGATLHHHHQHRRSQPPCLFLPFRPHFGFAKEGKCRSRSLSLLFSGNNNRNGFAVRASTEPSDDKNSDGATHIAPQPYSVKIPVGDRHILVETGHIGRQASASVTVTDGETIVYTSICLDDAASEPSDFFPLSVNYQERFSAAGRTSGGFFKREGKAKDHEVLTCRLIDRPLRPTMPKGFYHETQILSWVLSYDGLHSPDSLAVTAAGIAVALSEVPVSEVVAGVRVGLVGDKYIVNPTTEEMETSELDLVLAGTDSAILMIEGYSNLLPEEKLLKAVEVGQDAVRAICKEVEALVKKCGKPKMFDAIKLPPPELYKYVEEIAGDELLKVLQIRNKIPRRKAISALEDKVLKILTENGFVSNDPTLRSNAETIAEILEEEDEDEEVIVDGEVDEGDVHIKPTSPRPTRLFAEVDVKLVFKEVSSKFLRKRIVEGGRRSDGRTPNGIRPINARCGLLPRAHGSALFTRGETQSVAVVTLGDKQMAQRIDNLIDVEEYKRFYLQYSFPPSSVGEVGRIGAPSRREIGHGMLAERSLEPILPPEDDFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPIKCSIAGIAMGLVLDTKEFGGDGTPLILSDITGSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLPIMREALLQAREGRKHILGEMMKCSPPPAKSLSKHAPLIHIMKVQPERINLIIGSGGKKVRSIIEESGVEAIDTEDDGTVKITAKDLSCLERSKAMISSLTMVPTIGDIYRNCEIKSIVPYGAFVEIAPGREGLCHVSELSSGWLAKPEDAFQVGDRIDVKLIEINDKGHLRLSHRAMLPATESENSNSQPTSELPIDTAELQKSTDKGSSKKVNSLAKDGLAEGKSKQPRDKIGKVRVSSKRSAEDDSVIPSKKFIRKLVSPSEDKPSTNKDDVKRSNNEAFGSVSGKDENSLVSGEA 955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g02348 955 Pfam KH domain 698 754 IPR004088 GO:0003723
Aip06g02348 955 Gene3D - 763 834 IPR012340 -
Aip06g02348 955 TIGRFAM polynuc_phos: polyribonucleotide nucleotidyltransferase 423 833 IPR012162 GO:0003723|GO:0004654|GO:0006402
Aip06g02348 955 Gene3D - 408 689 IPR027408 -
Aip06g02348 955 Pfam 3' exoribonuclease family, domain 2 232 294 IPR015847 -
Aip06g02348 955 Gene3D - 73 313 IPR027408 -
Aip06g02348 955 CDD S1_PNPase 763 831 - -
Aip06g02348 955 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 696 782 IPR036612 GO:0003723
Aip06g02348 955 Gene3D K Homology domain, type 1 690 762 IPR036612 GO:0003723
Aip06g02348 955 SUPERFAMILY Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 323 453 IPR036456 GO:0003723|GO:0006396
Aip06g02348 955 PANTHER POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE 75 916 IPR012162 GO:0003723|GO:0004654|GO:0006402
Aip06g02348 955 MobiDBLite consensus disorder prediction 65 86 - -
Aip06g02348 955 Pfam S1 RNA binding domain 770 832 IPR003029 GO:0003676
Aip06g02348 955 SUPERFAMILY Ribosomal protein S5 domain 2-like 89 228 IPR020568 -
Aip06g02348 955 ProSiteProfiles Type-1 KH domain profile. 693 753 - -
Aip06g02348 955 SUPERFAMILY Ribonuclease PH domain 2-like 584 688 IPR036345 -
Aip06g02348 955 MobiDBLite consensus disorder prediction 880 935 - -
Aip06g02348 955 PANTHER POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE 1, CHLOROPLASTIC 75 916 - -
Aip06g02348 955 CDD RNase_PH_PNPase_2 457 684 - -
Aip06g02348 955 SUPERFAMILY Nucleic acid-binding proteins 756 835 IPR012340 -
Aip06g02348 955 ProSiteProfiles S1 domain profile. 763 832 IPR003029 GO:0003676
Aip06g02348 955 CDD PNPase_KH 693 753 - -
Aip06g02348 955 MobiDBLite consensus disorder prediction 858 955 - -
Aip06g02348 955 SUPERFAMILY Ribonuclease PH domain 2-like 232 315 IPR036345 -
Aip06g02348 955 SMART kh_6 692 758 IPR004087 GO:0003676
Aip06g02348 955 MobiDBLite consensus disorder prediction 936 955 - -
Aip06g02348 955 Pfam 3' exoribonuclease family, domain 1 457 590 IPR001247 -
Aip06g02348 955 Pfam 3' exoribonuclease family, domain 1 98 228 IPR001247 -
Aip06g02348 955 Hamap Polyribonucleotide nucleotidyltransferase [pnp]. 87 835 IPR012162 GO:0003723|GO:0004654|GO:0006402
Aip06g02348 955 SUPERFAMILY Ribosomal protein S5 domain 2-like 430 602 IPR020568 -
Aip06g02348 955 SMART S1_6 761 832 IPR022967 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g02348 Aip-Chr6 106872603 106897593 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g02348 K00962 - jre:109000860 1309.28