Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g02300 ATGGTTGGGGCCGCCCCACGGTTCCTCTCTCTCCTCACCACAGCTCCCTCCCCTCTCCTCCGCCACCGCCGCCACCTCCTCCTCCTCTCCGCAAACTTCCGCCGCCTCTCCACTCCCTTTTCAACTTTCGCACCCTCTCCTCTCAAACTCAAACCGTCCCAGCACCATCACCATCCACAACCACAACAGCAGCACCAGCAGCAGCAACGCTTTCAAACCGTAGCAGCTTTCTCTCCTTCTTCTTCCGACACCTTTCCTTCCTCAGTCTCACACCCATGGCCCGAGTGGTCCCGCTTCCTCTCCCACCTCACCTCCGCCGGGTACCTCCACCGCCCGCCCCCTGACCTCGGAACCTTCGCGCCGCCCCCTGAGTTGTCGCGCCAATTCGTTGCGGAGGCTGCCGCTTGCTACGCCTTCGCCGCTGATAGACCCAACCTCTTGCGGTTGCTTTCGAAGAGAGACGTCGGGGTTGTGGTTGAAAATGGTAACCCCTTTCTGTTCCGAGATGCAAAGGAATCCATCGCAAAGATGAAAGCTTTCGTGTCAACCAATGATGCCGACGTATTGGACACTGACAGAGCAACAACAGTTGATCTAATGAAGTTTATGCTTAGTTATGCAAGTAACCCATTGGTTACATCTGAAAGCAATAATCTATCTAACAGAGATATTGTTGAATCATCTGTGAGAAATCTGTTTGGTGAACTTTACAAGCTGAGTTACAGTGCACCTGGGCCCAACTCTTCCGGTTCGGTGCAAAATCAAATATCTAGTGGATATGGACAGACAATGCCTCCTGGTCGAAACATTGAAATGAAAAGGGGTGATTGGATTTGCCCAAGGTGTAATTTCATGAATTTCGCAAGAAATGTTAAATGCCGCGAGTGTGAGGAAGCAAGGCCAAAAAGACAATTGACAGGAGGAGAATGGGAATGTCCTCAGTGCGATTTCTATAATTATGGGAGGAATATGACTTGCTTAAGGTGTGATTGCAAGCGACCGGGACAGATATCTTTGGGTCCTGCCAATACCCTGTCAAATATGGGGTATGGAAATGGAGACAATACTAATACTTCAGAGATTGATAGTAGACTAGCTGCTAATGAAGAGAAAGCACGGCGTTGGTTTAGTAAGGTTTCTCAACTAGACAGCAGTGCGGATATTGACAGCTTGATTGGGGATGAAGATTTTCCCGAGATAATGCCATTAAGGAAAGGAGTAAATAGATTTGTTGTGAGCACAAGGAAAACTCCGTTGGAGAGGAGATTGGCTGACGCTCGATACAGGAGAAACTTGGACAATAATGGCATTCCCAGGGTTGAGGATTTTAAAGCTGAGGAATCAACCAGGATAAATGATCCTCCATTTTCTTCAGATCTGGCTGCCCAAAAAATTGAGAACATGACAACAGAAAAGAGCGAAACTGATGCTCAGTATGCAGGTACTAGTTCAGGTAACAATTCACAACTTTCTAATAATTCTACAAACCAAAATGGCATCATAGATAAGGAGAAAGATCAAGCTGAAAAATCTGAGCGGTGGTTTAGAAAGGTTGCTGAGTTGCATGATATTTCAGATTCATCAAGCAGGGTATCTGATGAGGACTTCCCTGAAGTAATGCCTATGCGCACAGGAGAAAACCGATTTGTTGTTAGCAAGAAAAAGGATCGATCTTTGACTTCACCTGCGTACAAGAGACGATTGGCCATGGAACAATCTGGCAACAATACCAACTTTGTCCCCTTTGTTCCCTTCCCTCCAGATTACTTTGCCAAAAAGGACAAGCAACCGGAAAATGGAGTAGATTCAGTGGATATTTCTTCGACTGCTGAATCATCTTCAATATCTGAAGCGGCAGAGAATCTTCCAAAGATGCCAGATGATGCTAGAGCTAGAGCTGAGTTACGAGGCGCAAACTATTCCCCAGGTATGACCAATGCTGAAACAATGTCTGGGGTTCCAGAGATCTTCCATAATGCTACATTTGGCCGGGAAAGAAAAGAAAATGTCAGAGAGATTAGAAGACAAGATGAAAACATGAAGAACTGTAGTCCAGAACCTTCCAGACAGCACTCGACTAAAAATGATATTGGTTCCATTTCTGGGGCATTAACTAGTGGAAATTCCAGTTTCAATCAAGAGAATTCCGGGAACAAGAACAGCAATCAAGAGCCAAATTTGACAGGCAGTTTGGAAAACCAGAATAACAGAACACAGTGGACAGGAAAGAGTTTGGAGGGGTCAGCTGTCAAGGAACCAGATCCTTTGGACATGTCAGAGGAGGCAAAGGCAGAGAGGTGGTTCCGTCGTGTCGCACAGATCAAGGATATCTCTGAGCTCAGTCAGATTCCAGATGAAGATTTTCCTTCGATAATGCCTATGCGTAAAGGCGTGAATAGATTTGTTGTGAGCAAGAGGAAAACGCCGTTGGAAAGGAGATCGACATCTCAGCAGTACCGAAGAAACCTTCCTGTTGTGAGTTCAGATCCTCTTAAAAAGGAAAATGAAGGTAGCTGA 2517 0.4621 MVGAAPRFLSLLTTAPSPLLRHRRHLLLLSANFRRLSTPFSTFAPSPLKLKPSQHHHHPQPQQQHQQQQRFQTVAAFSPSSSDTFPSSVSHPWPEWSRFLSHLTSAGYLHRPPPDLGTFAPPPELSRQFVAEAAACYAFAADRPNLLRLLSKRDVGVVVENGNPFLFRDAKESIAKMKAFVSTNDADVLDTDRATTVDLMKFMLSYASNPLVTSESNNLSNRDIVESSVRNLFGELYKLSYSAPGPNSSGSVQNQISSGYGQTMPPGRNIEMKRGDWICPRCNFMNFARNVKCRECEEARPKRQLTGGEWECPQCDFYNYGRNMTCLRCDCKRPGQISLGPANTLSNMGYGNGDNTNTSEIDSRLAANEEKARRWFSKVSQLDSSADIDSLIGDEDFPEIMPLRKGVNRFVVSTRKTPLERRLADARYRRNLDNNGIPRVEDFKAEESTRINDPPFSSDLAAQKIENMTTEKSETDAQYAGTSSGNNSQLSNNSTNQNGIIDKEKDQAEKSERWFRKVAELHDISDSSSRVSDEDFPEVMPMRTGENRFVVSKKKDRSLTSPAYKRRLAMEQSGNNTNFVPFVPFPPDYFAKKDKQPENGVDSVDISSTAESSSISEAAENLPKMPDDARARAELRGANYSPGMTNAETMSGVPEIFHNATFGRERKENVREIRRQDENMKNCSPEPSRQHSTKNDIGSISGALTSGNSSFNQENSGNKNSNQEPNLTGSLENQNNRTQWTGKSLEGSAVKEPDPLDMSEEAKAERWFRRVAQIKDISELSQIPDEDFPSIMPMRKGVNRFVVSKRKTPLERRSTSQQYRRNLPVVSSDPLKKENEGS 838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g02300 838 SMART zf_4 275 299 IPR001876 -
Aip06g02300 838 SMART zf_4 308 332 IPR001876 -
Aip06g02300 838 MobiDBLite consensus disorder prediction 47 72 - -
Aip06g02300 838 ProSiteProfiles Zinc finger RanBP2 type profile. 273 302 IPR001876 -
Aip06g02300 838 ProSiteProfiles Zinc finger RanBP2 type profile. 306 335 IPR001876 -
Aip06g02300 838 Pfam Zn-finger in Ran binding protein and others 274 300 IPR001876 -
Aip06g02300 838 Pfam Zn-finger in Ran binding protein and others 308 334 IPR001876 -
Aip06g02300 838 MobiDBLite consensus disorder prediction 439 458 - -
Aip06g02300 838 MobiDBLite consensus disorder prediction 660 684 - -
Aip06g02300 838 MobiDBLite consensus disorder prediction 685 745 - -
Aip06g02300 838 ProSitePatterns Zinc finger RanBP2-type signature. 310 329 IPR001876 -
Aip06g02300 838 MobiDBLite consensus disorder prediction 468 501 - -
Aip06g02300 838 Gene3D - 304 336 - -
Aip06g02300 838 Gene3D - 266 303 - -
Aip06g02300 838 MobiDBLite consensus disorder prediction 658 761 - -
Aip06g02300 838 SUPERFAMILY Ran binding protein zinc finger-like 267 302 IPR036443 -
Aip06g02300 838 PANTHER ZINC FINGER PROTEIN VAR3, CHLOROPLASTIC 3 837 - -
Aip06g02300 838 MobiDBLite consensus disorder prediction 601 619 - -
Aip06g02300 838 MobiDBLite consensus disorder prediction 468 507 - -
Aip06g02300 838 PANTHER ZINC FINGER PROTEIN 3 837 - -
Aip06g02300 838 MobiDBLite consensus disorder prediction 805 838 - -
Aip06g02300 838 MobiDBLite consensus disorder prediction 591 627 - -
Aip06g02300 838 ProSitePatterns Zinc finger RanBP2-type signature. 277 296 IPR001876 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g02300 Aip-Chr6 104530080 104533819 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g02300 89 339 EF-hand Containing Proteins AT1G55040 33.788 1.74e-43 168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g02300 - - aip:107604755 1572.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g02300 06 104530080 104533819 Aip06g02300 06 104530080 104533819 ECH